Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2356 Cannabis sativa HOM05D000244 ORTHO05D113969 2.0e-48 195.7 117 100.0
CANSAT54G0659 Cannabis sativa HOM05D000244 ORTHO05D000179 1.6e-29 132.9 85 92.9
Duzib106G1582 Durio zibethinus HOM05D000244 ORTHO05D000179 6.2e-13 77.8 92 57.6
Oeu034582.1 Olea europaea HOM05D000244 ORTHO05D000179 5.2e-12 74.7 97 57.7
PGR004G2740 Punica granatum HOM05D000244 ORTHO05D000179 8.9e-12 73.9 87 56.3
Eucgr.H04257 Eucalyptus grandis HOM05D000244 ORTHO05D000179 1.5e-11 73.2 85 61.2
Lj6P659T14 Lonicera japonica HOM05D000244 ORTHO05D000179 4.4e-11 71.6 91 50.5
Ah.04g163350 Amaranthus hybridus HOM05D000244 ORTHO05D000179 5.8e-11 71.2 93 62.4
TAR365G0884 Trochodendron aralioides HOM05D000244 ORTHO05D000179 3.7e-10 68.6 90 47.8
Duzib212G0350 Durio zibethinus HOM05D000244 ORTHO05D000179 1.4e-09 66.6 95 48.4
Haze_04462 Corylus avellana HOM05D000244 ORTHO05D000179 1.9e-09 66.2 90 44.4
HanXRQChr05g0147691 Helianthus annuus HOM05D000244 ORTHO05D000179 1.9e-09 66.2 89 46.1
Cfa006326 Carpinus fangiana HOM05D000244 ORTHO05D000179 2.4e-09 65.9 90 44.4
Thecc.04G249400 Theobroma cacao HOM05D000244 ORTHO05D000179 2.4e-09 65.9 88 48.9
DCAR_024236 Daucus carota HOM05D000244 ORTHO05D000179 3.2e-09 65.5 84 54.8
Gohir.D09G226300 Gossypium hirsutum HOM05D000244 ORTHO05D000179 3.2e-09 65.5 86 52.3
Gorai.006G247900 Gossypium raimondii HOM05D000244 ORTHO05D000179 3.2e-09 65.5 86 52.3
Manes.15G037900 Manihot esculenta HOM05D000244 ORTHO05D000179 3.2e-09 65.5 94 48.9
Cpa.g.c41226 Carica papaya HOM05D000244 ORTHO05D000179 4.1e-09 65.1 87 47.1
Gohir.A09G224500 Gossypium hirsutum HOM05D000244 ORTHO05D000179 4.1e-09 65.1 86 47.7
Duzib151G1007 Durio zibethinus HOM05D000244 ORTHO05D000179 5.4e-09 64.7 95 49.5
TAR636G2218 Trochodendron aralioides HOM05D000244 ORTHO05D000179 5.4e-09 64.7 90 47.8
Carub.0007s2775 Capsella rubella HOM05D000244 ORTHO05D000179 7.1e-09 64.3 84 56.0
Manes.09G149500 Manihot esculenta HOM05D000244 ORTHO05D000179 7.1e-09 64.3 82 64.6
Oeu021420.1 Olea europaea HOM05D000244 ORTHO05D000179 7.1e-09 64.3 95 48.4
Oeu032958.1 Olea europaea HOM05D000244 ORTHO05D000179 7.1e-09 64.3 89 49.4
Actinidia39886 Actinidia chinensis HOM05D000244 ORTHO05D000179 9.2e-09 63.9 89 48.3
CiPaw.02G115200 Carya illinoinensis HOM05D000244 ORTHO05D000179 9.2e-09 63.9 94 46.8
Duzib052G1155 Durio zibethinus HOM05D000244 ORTHO05D000179 9.2e-09 63.9 95 47.4
Lsat_1_v5_gn_0_141 Lactuca sativa HOM05D000244 ORTHO05D000179 9.2e-09 63.9 81 48.1
Sc20g0000550 Simmondsia chinensis HOM05D000244 ORTHO05D000179 9.2e-09 63.9 81 53.1
MSTRG.21896 Avicennia marina HOM05D000244 ORTHO05D000179 1.2e-08 63.5 86 58.1
Sed0005027 Sechium edule HOM05D000244 ORTHO05D000179 1.2e-08 63.5 83 51.8
AUR62001078 Chenopodium quinoa HOM05D000244 ORTHO05D000179 1.6e-08 63.2 78 59.0
MSTRG.9917 Avicennia marina HOM05D000244 ORTHO05D000179 2.1e-08 62.8 86 50.0
Cc02_g09050 Coffea canephora HOM05D000244 ORTHO05D000179 2.1e-08 62.8 90 54.4
FAN02G4045 Fragaria x ananassa HOM05D000244 ORTHO05D000179 2.1e-08 62.8 93 45.2
FAN09G1355 Fragaria x ananassa HOM05D000244 ORTHO05D000179 2.1e-08 62.8 93 45.2
FAN14G1468 Fragaria x ananassa HOM05D000244 ORTHO05D000179 2.1e-08 62.8 93 45.2
FAN14G3093 Fragaria x ananassa HOM05D000244 ORTHO05D000179 2.1e-08 62.8 93 45.2
Lj5g0017772 Lotus japonicus HOM05D000244 ORTHO05D000179 2.1e-08 62.8 87 46.0
Aqoxy2G03609 Aquilegia oxysepala HOM05D000244 ORTHO05D000179 2.7e-08 62.4 86 45.3
Ciclev10005603m.g Citrus clementina HOM05D000244 ORTHO05D000179 2.7e-08 62.4 89 48.3
MBI17_g17498_MAGBIO Magnolia biondii HOM05D000244 ORTHO05D000179 2.7e-08 62.4 89 46.1
HPP92_002434 Vanilla planifolia HOM05D000244 ORTHO05D000179 2.7e-08 62.4 78 48.7
MD07G1202700 Malus domestica HOM05D000244 ORTHO05D000179 3.5e-08 62.0 80 53.8
Manes.08G137400 Manihot esculenta HOM05D000244 ORTHO05D000179 3.5e-08 62.0 81 54.3
TWI56G0513 Tripterygium wilfordii HOM05D000244 ORTHO05D000179 3.5e-08 62.0 81 66.7
Aa31LG5G14990 Aethionema arabicum HOM05D000244 ORTHO05D000179 4.6e-08 61.6 77 51.9
FvH4_4g03050 Fragaria vesca HOM05D000244 ORTHO05D000179 4.6e-08 61.6 94 45.7
FAN12G0543 Fragaria x ananassa HOM05D000244 ORTHO05D000179 4.6e-08 61.6 94 45.7
FAN17G1631 Fragaria x ananassa HOM05D000244 ORTHO05D000179 4.6e-08 61.6 94 45.7
Gohir.A11G251300 Gossypium hirsutum HOM05D000244 ORTHO05D000179 4.6e-08 61.6 94 57.4
SGA_v2.0_scaffold101G29827 Striga asiatica HOM05D000244 ORTHO05D000179 4.6e-08 61.6 97 52.6
MSTRG.9003 Avicennia marina HOM05D000244 ORTHO05D000179 6.0e-08 61.2 83 50.6
DCAR_027290 Daucus carota HOM05D000244 ORTHO05D000179 6.0e-08 61.2 86 48.8
Nitab4.5_0000342g0220 Nicotiana tabacum HOM05D000244 ORTHO05D000179 7.8e-08 60.8 91 44.0
Oeu028685.1 Olea europaea HOM05D000244 ORTHO05D000179 7.8e-08 60.8 85 47.1
ECA232G0169 Erigeron canadensis HOM05D000244 ORTHO05D000179 1.0e-07 60.5 82 45.1
FAN22G0886 Fragaria x ananassa HOM05D000244 ORTHO05D000179 1.0e-07 60.5 94 42.6
Lj2C39T17 Lonicera japonica HOM05D000244 ORTHO05D000179 1.0e-07 60.5 82 47.6
MD12G1245400 Malus domestica HOM05D000244 ORTHO05D000179 1.0e-07 60.5 79 65.8
Oeu058877.1 Olea europaea HOM05D000244 ORTHO05D000179 1.0e-07 60.5 87 47.1
Atru.chr4.2142 Acer truncatum HOM05D000244 ORTHO05D000179 1.3e-07 60.1 91 49.5
Lj8C80T3 Lonicera japonica HOM05D000244 ORTHO05D000179 1.3e-07 60.1 84 50.0
PGSC0003DMG400017252 Solanum tuberosum HOM05D000244 ORTHO05D000179 1.3e-07 60.1 95 45.3
TAR362G1281 Trochodendron aralioides HOM05D000244 ORTHO05D000179 1.3e-07 60.1 91 47.3
Ah.06g191980 Amaranthus hybridus HOM05D000244 ORTHO05D000179 1.7e-07 59.7 78 51.3
Gohir.D11G261700 Gossypium hirsutum HOM05D000244 ORTHO05D000179 1.7e-07 59.7 94 56.4
Gorai.007G280400 Gossypium raimondii HOM05D000244 ORTHO05D000179 1.7e-07 59.7 94 56.4
Lsat_1_v5_gn_8_2621 Lactuca sativa HOM05D000244 ORTHO05D000179 1.7e-07 59.7 81 49.4
Cpa.g.sc44.95 Carica papaya HOM05D000244 ORTHO05D000179 2.3e-07 59.3 80 50.0
AUR62004882 Chenopodium quinoa HOM05D000244 ORTHO05D000179 2.3e-07 59.3 76 61.8
Dinv29890 Davidia involucrata HOM05D000244 ORTHO05D000179 2.3e-07 59.3 90 51.1
Duzib177G1085 Durio zibethinus HOM05D000244 ORTHO05D000179 2.3e-07 59.3 99 48.5
Lalb_Chr02g0150581 Lupinus albus HOM05D000244 ORTHO05D000179 2.3e-07 59.3 97 54.6
Manes.03G167300 Manihot esculenta HOM05D000244 ORTHO05D000179 2.3e-07 59.3 83 61.4
Potri.008G164466 Populus trichocarpa HOM05D000244 ORTHO05D000179 2.3e-07 59.3 91 46.2
MELO3C004413.2 Cucumis melo HOM05D000244 ORTHO05D000179 3.0e-07 58.9 87 55.2
Glyma.10G008400 Glycine max HOM05D000244 ORTHO05D000179 3.0e-07 58.9 95 52.6
Nitab4.5_0002651g0010 Nicotiana tabacum HOM05D000244 ORTHO05D000179 3.0e-07 58.9 90 65.6
RcHm_v2.0_Chr3g0450081 Rosa chinensis HOM05D000244 ORTHO05D000179 3.0e-07 58.9 88 54.5
CAN.G793.2 Capsicum annuum HOM05D000244 ORTHO05D000179 3.9e-07 58.5 92 44.6
FvH4_6g02320 Fragaria vesca HOM05D000244 ORTHO05D000179 3.9e-07 58.5 93 49.5
FAN05G1498 Fragaria x ananassa HOM05D000244 ORTHO05D000179 3.9e-07 58.5 93 49.5
FAN05G4810 Fragaria x ananassa HOM05D000244 ORTHO05D000179 3.9e-07 58.5 93 49.5
Hma1.2p1_0986F.1_g244380 Hydrangea macrophylla HOM05D000244 ORTHO05D000179 3.9e-07 58.5 94 40.4
Lalb_Chr21g0312391 Lupinus albus HOM05D000244 ORTHO05D000179 3.9e-07 58.5 106 41.5
Rhsim04G0188500 Rhododendron simsii HOM05D000244 ORTHO05D000179 3.9e-07 58.5 79 48.1
RcHm_v2.0_Chr4g0391331 Rosa chinensis HOM05D000244 ORTHO05D000179 3.9e-07 58.5 95 49.5
Sopen09g032560 Solanum pennellii HOM05D000244 ORTHO05D000179 3.9e-07 58.5 93 44.1
Actinidia11337 Actinidia chinensis HOM05D000244 ORTHO05D000179 5.1e-07 58.2 94 48.9
CANSAT78G1403 Cannabis sativa HOM05D000244 ORTHO05D000179 5.1e-07 58.2 98 56.1
COL.COLO4_15822 Corchorus olitorius HOM05D000244 ORTHO05D000179 5.1e-07 58.2 97 55.7
Glyma.20G087200 Glycine max HOM05D000244 ORTHO05D000179 5.1e-07 58.2 97 57.7
Potri.010G074201 Populus trichocarpa HOM05D000244 ORTHO05D000179 5.1e-07 58.2 89 43.8
Prupe.6G348200 Prunus persica HOM05D000244 ORTHO05D000179 5.1e-07 58.2 90 55.6
PGSC0003DMG400017578 Solanum tuberosum HOM05D000244 ORTHO05D000179 5.1e-07 58.2 77 42.9
Actinidia06782 Actinidia chinensis HOM05D000244 ORTHO05D000179 6.6e-07 57.8 83 55.4
Dinv03262 Davidia involucrata HOM05D000244 ORTHO05D000179 6.6e-07 57.8 80 57.5
Solyc09g089620.1 Solanum lycopersicum HOM05D000244 ORTHO05D000179 6.6e-07 57.8 93 41.9
AL7G41670 Arabidopsis lyrata HOM05D000244 ORTHO05D000179 8.6e-07 57.4 84 46.4
MSTRG.4114 Avicennia marina HOM05D000244 ORTHO05D000179 8.6e-07 57.4 85 47.1
CsaV3_2G003830 Cucumis sativus L. HOM05D000244 ORTHO05D000179 8.6e-07 57.4 91 53.8
Nitab4.5_0009815g0010 Nicotiana tabacum HOM05D000244 ORTHO05D000179 8.6e-07 57.4 92 45.7
Os02g0820800 Oryza sativa ssp. japonica HOM05D000244 ORTHO05D000179 8.6e-07 57.4 77 48.1
TWI73G0395 Tripterygium wilfordii HOM05D000244 ORTHO05D000179 8.6e-07 57.4 86 46.5
GSVIVG01036210001 Vitis vinifera HOM05D000244 ORTHO05D000179 8.6e-07 57.4 81 59.3
Peaxi162Scf00135g00082 Petunia axillaris HOM05D000244 ORTHO05D000179 1.1e-06 57.0 87 63.2
Atru.chr2.891 Acer truncatum HOM05D000244 ORTHO05D000179 1.5e-06 56.6 83 53.0
CSS0022210 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D000179 1.5e-06 56.6 89 65.2
CSS0023327 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D000179 1.5e-06 56.6 89 65.2
ECA233G5717 Erigeron canadensis HOM05D000244 ORTHO05D000179 1.5e-06 56.6 94 41.5
Nitab4.5_0000856g0200 Nicotiana tabacum HOM05D000244 ORTHO05D000179 1.5e-06 56.6 98 57.1
Nitab4.5_0000930g0030 Nicotiana tabacum HOM05D000244 ORTHO05D000179 1.5e-06 56.6 90 63.3
Peaxi162Scf00120g00212 Petunia axillaris HOM05D000244 ORTHO05D000179 1.5e-06 56.6 94 60.6
Sc10g0001810 Simmondsia chinensis HOM05D000244 ORTHO05D000179 1.5e-06 56.6 100 45.0
MSTRG.24692 Avicennia marina HOM05D000244 ORTHO05D000179 1.9e-06 56.2 87 59.8
BcaB04g19318 Brassica carinata HOM05D000244 ORTHO05D000179 1.9e-06 56.2 84 39.3
Ca_11991_v3 Cicer arietinum L. HOM05D000244 ORTHO05D000179 1.9e-06 56.2 107 57.0
Ca_11992_v3 Cicer arietinum L. HOM05D000244 ORTHO05D000179 1.9e-06 56.2 107 57.0
Psat6g134280 Pisum sativum HOM05D000244 ORTHO05D000179 1.9e-06 56.2 90 52.2
Ciclev10023369m.g Citrus clementina HOM05D000244 ORTHO05D000179 2.5e-06 55.8 87 51.7
Haze_17111 Corylus avellana HOM05D000244 ORTHO05D000179 2.5e-06 55.8 86 43.0
Nn1g02690 Nelumbo nucifera HOM05D000244 ORTHO05D000179 2.5e-06 55.8 84 42.9
QL06p016573 Quercus lobata HOM05D000244 ORTHO05D000179 2.5e-06 55.8 86 48.8
Solyc06g060500.1 Solanum lycopersicum HOM05D000244 ORTHO05D000179 2.5e-06 55.8 77 44.2
Sopen06g020620 Solanum pennellii HOM05D000244 ORTHO05D000179 2.5e-06 55.8 77 44.2
BcaB02g08605 Brassica carinata HOM05D000244 ORTHO05D000179 3.3e-06 55.5 84 45.2
CSS0021339 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D000179 3.3e-06 55.5 88 47.7
Lalb_Chr21g0311271 Lupinus albus HOM05D000244 ORTHO05D000179 3.3e-06 55.5 86 43.0
Nitab4.5_0004928g0050 Nicotiana tabacum HOM05D000244 ORTHO05D000179 3.3e-06 55.5 97 58.8
Psat6g105960 Pisum sativum HOM05D000244 ORTHO05D000179 3.3e-06 55.5 100 60.0
Sabra10G0034300 Salix brachista HOM05D000244 ORTHO05D000179 3.3e-06 55.5 89 43.8
TWI09G0680 Tripterygium wilfordii HOM05D000244 ORTHO05D000179 3.3e-06 55.5 79 49.4
A05p42920 Brassica napus HOM05D000244 ORTHO05D000179 4.3e-06 55.1 76 56.6
BraA05t23037Z Brassica rapa HOM05D000244 ORTHO05D000179 4.3e-06 55.1 76 56.6
CiPaw.07G077900 Carya illinoinensis HOM05D000244 ORTHO05D000179 4.3e-06 55.1 104 49.0
BcaC05g30187 Brassica carinata HOM05D000244 ORTHO05D000179 5.6e-06 54.7 76 44.7
Oeu038982.1 Olea europaea HOM05D000244 ORTHO05D000179 5.6e-06 54.7 79 46.8
Peaxi162Scf00102g01217 Petunia axillaris HOM05D000244 ORTHO05D000179 5.6e-06 54.7 75 50.7
SalBow3G1229 Salvia bowleyana HOM05D000244 ORTHO05D000179 5.6e-06 54.7 84 54.8
Zm00001eb259170 Zea mays HOM05D000244 ORTHO05D000179 5.6e-06 54.7 77 45.5
AT4G14465 Arabidopsis thaliana HOM05D000244 ORTHO05D000179 7.3e-06 54.3 84 46.4
ClCG02G016940 Citrullus lanatus HOM05D000244 ORTHO05D000179 7.3e-06 54.3 88 51.1
Hma1.2p1_0345F.1_g131200 Hydrangea macrophylla HOM05D000244 ORTHO05D000179 7.3e-06 54.3 84 64.3
QL03p032077 Quercus lobata HOM05D000244 ORTHO05D000179 7.3e-06 54.3 88 60.2
TAR369G0573 Trochodendron aralioides HOM05D000244 ORTHO05D000179 7.3e-06 54.3 78 48.7
DCAR_011725 Daucus carota HOM05D000244 ORTHO05D000179 9.5e-06 53.9 81 51.9
Gohir.1Z049484 Gossypium hirsutum HOM05D000244 ORTHO05D000179 9.5e-06 53.9 98 44.9
Gohir.A02G037001 Gossypium hirsutum HOM05D000244 ORTHO05D000179 9.5e-06 53.9 98 44.9
Gohir.D02G043601 Gossypium hirsutum HOM05D000244 ORTHO05D000179 9.5e-06 53.9 98 44.9
Gorai.005G048000 Gossypium raimondii HOM05D000244 ORTHO05D000179 9.5e-06 53.9 98 44.9
Oeu040972.1 Olea europaea HOM05D000244 ORTHO05D000179 9.5e-06 53.9 81 44.4
Sabra08G0125200 Salix brachista HOM05D000244 ORTHO05D000179 9.5e-06 53.9 91 44.0


User provided reference genes

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