Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1712.2 955 100.0
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1260.4 960 70.8
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1248.0 966 70.0
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1237.6 967 72.1
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1231.9 968 74.1
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1213.7 1044 64.7
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1209.9 954 73.9
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1203.3 962 73.0
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1184.5 963 65.6
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1179.5 948 72.2
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1176.8 967 67.0
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1174.1 956 67.1
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1173.7 958 71.4
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1173.3 971 65.1
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1173.3 962 66.7
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1172.9 951 72.2
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1172.5 963 65.7
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1167.5 956 66.6
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1166.0 959 70.3
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1165.2 958 64.8
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1158.7 958 71.0
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1157.9 964 69.7
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1156.4 951 64.9
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1155.2 958 67.3
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1154.8 956 65.9
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1153.7 976 62.1
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1150.2 950 71.5
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1146.0 972 68.4
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1145.6 955 71.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1145.6 961 69.9
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1144.8 962 70.0
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1142.5 959 71.3
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1141.7 955 70.3
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1140.2 954 71.0
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 955 69.1
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 966 68.7
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1135.9 958 68.8
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1133.2 958 68.7
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1130.9 954 65.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1128.6 962 68.7
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1124.4 973 63.8
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1113.6 974 63.7
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1110.9 958 65.7
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1110.5 955 68.9
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 960 63.5
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1108.2 890 67.4
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1105.9 957 64.2
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1105.5 952 68.6
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1104.4 961 64.6
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1099.7 963 62.4
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1099.0 973 67.2
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1099.0 977 64.5
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1095.1 968 62.9
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1094.0 957 69.1
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1092.8 903 65.1
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1092.0 951 62.8
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1086.2 1004 60.4
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1084.7 968 67.3
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1081.6 959 62.3
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1078.2 962 63.0
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 4.3e-309 1064.7 955 66.1
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.3e-309 1064.7 957 62.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.2e-308 1063.1 1000 59.8
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.1e-308 1062.4 992 60.8
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.1e-307 1060.1 966 62.2
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 5.2e-307 1057.7 973 66.2
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 8.9e-307 1057.0 985 59.9
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.0e-306 1055.8 997 59.9
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 7.6e-306 1053.9 956 66.7
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 4.9e-305 1051.2 993 60.4
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 4.9e-305 1051.2 960 66.4
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 4.2e-304 1048.1 950 61.1
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 4.8e-300 1034.6 959 59.3
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 5.3e-299 1031.2 957 59.9
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 7.6e-298 1027.3 887 61.6
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 3.2e-296 1021.9 932 61.5
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 9.3e-288 993.8 959 57.1
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 8.1e-284 980.7 962 57.8
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 4.0e-283 978.4 958 59.7
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 6.9e-283 977.6 959 61.7
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.3e-278 962.6 962 55.6
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.9e-277 959.5 979 61.3
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.9e-277 959.5 974 57.1
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 5.7e-277 958.0 964 63.0
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 3.7e-276 955.3 959 61.4
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 8.2e-276 954.1 959 61.6
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-274 949.5 955 61.3
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-274 949.5 955 61.3
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 3.4e-274 948.7 813 64.1
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 2.2e-273 946.0 956 56.3
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 3.9e-270 935.3 960 59.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.5e-269 933.3 836 66.3
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 2.4e-267 926.0 957 59.8
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 1.5e-266 923.3 956 59.7
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 4.5e-266 921.8 955 59.6
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 7.7e-266 921.0 956 59.5
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.7e-265 919.8 957 59.4
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.8e-265 918.7 956 59.4
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.8e-251 873.2 1001 52.2
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.2e-226 790.8 774 57.5
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 8.6e-225 784.6 881 52.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 3.5e-218 762.7 977 49.6
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.7e-178 630.2 601 63.4
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 2.1e-175 620.5 977 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 2.8e-175 620.2 890 44.5
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.5e-157 561.2 801 48.6
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 5.2e-137 493.0 505 54.5
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.4e-126 458.4 454 54.6
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.6e-125 454.9 551 45.2
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 1.3e-119 435.3 809 36.5
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.6e-82 312.0 369 52.0
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.1e-81 309.3 861 30.5
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 4.0e-81 307.4 785 30.2
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.3e-66 259.2 537 37.4
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.3e-60 239.2 884 25.5
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.6e-53 215.7 172 64.5
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.7e-53 214.9 259 46.7
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 6.2e-50 203.8 272 46.0
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.6e-29 136.0 84 78.6
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 7.7e-24 117.1 67 79.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 9.4e-22 110.2 66 81.8
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 4.7e-21 107.8 90 58.9
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.4e-20 106.3 90 57.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.0e-20 105.1 100 58.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 9.1e-17 93.6 90 55.6
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 2.0e-16 92.4 90 54.4
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.9e-16 90.9 205 34.1
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.5e-14 85.5 158 36.1
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.2e-10 72.4 37 89.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.7e-08 65.5 155 36.1
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 2.5e-06 58.9 55 54.5


User provided reference genes

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