Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 7.8e-164 580.5 312 100.0
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 9.7e-106 387.5 227 81.5
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 1.3e-105 387.1 294 67.3
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 2.0e-103 379.8 218 81.7
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 1.3e-102 377.1 229 79.9
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 1.5e-101 373.6 245 73.5
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 3.2e-101 372.5 245 73.5
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 3.2e-101 372.5 219 79.9
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 5.5e-101 371.7 220 80.5
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 5.5e-101 371.7 230 76.1
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 1.2e-100 370.5 249 72.3
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 4.7e-100 368.6 220 79.1
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 1.4e-99 367.1 230 76.1
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 1.4e-99 367.1 222 79.7
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 1.4e-99 367.1 217 79.7
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 1.8e-99 366.7 246 72.8
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 2.3e-99 366.3 225 77.8
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 2.3e-99 366.3 225 77.8
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 5.2e-99 365.2 225 77.8
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 5.2e-99 365.2 246 72.8
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 6.7e-99 364.8 222 77.0
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 8.8e-99 364.4 218 79.4
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 1.2e-98 364.0 253 69.6
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 1.5e-98 363.6 248 71.4
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 1.5e-98 363.6 256 72.3
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 2.0e-98 363.2 222 77.9
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 3.3e-98 362.5 304 63.2
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 3.3e-98 362.5 218 79.4
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 4.4e-98 362.1 261 71.3
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 7.5e-98 361.3 246 72.4
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 9.7e-98 360.9 218 77.1
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 9.7e-98 360.9 238 73.5
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 9.7e-98 360.9 262 71.0
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.3e-97 360.5 215 80.9
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 1.3e-97 360.5 302 63.6
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 1.7e-97 360.1 216 79.6
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 1.7e-97 360.1 226 76.5
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.7e-97 360.1 241 73.0
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 1.7e-97 360.1 243 72.8
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 2.8e-97 359.4 216 78.7
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 3.7e-97 359.0 242 74.4
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 4.8e-97 358.6 247 71.3
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 6.3e-97 358.2 223 76.7
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.1e-96 357.5 227 75.3
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 2.4e-96 356.3 219 79.0
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 5.3e-96 355.1 218 78.0
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 1.2e-95 354.0 231 75.8
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 1.2e-95 354.0 224 75.4
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 1.6e-95 353.6 226 74.3
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.0e-95 353.2 224 75.9
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 4.5e-95 352.1 209 79.4
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 5.9e-95 351.7 206 83.0
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 5.9e-95 351.7 249 69.9
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 1.3e-94 350.5 216 77.3
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.9e-94 349.4 248 71.0
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 2.9e-94 349.4 247 70.9
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 5.0e-94 348.6 210 78.6
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 6.5e-94 348.2 246 69.9
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 6.5e-94 348.2 220 78.6
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 8.5e-94 347.8 218 75.7
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 8.5e-94 347.8 215 76.3
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 8.5e-94 347.8 219 73.5
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 1.5e-93 347.1 230 73.0
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 2.5e-93 346.3 284 65.5
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 3.2e-93 345.9 243 70.8
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 4.2e-93 345.5 246 69.5
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 7.2e-93 344.7 225 75.1
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 9.4e-93 344.4 206 81.1
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 1.6e-92 343.6 208 80.3
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 2.7e-92 342.8 218 73.4
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 4.7e-92 342.0 211 76.8
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 8.0e-92 341.3 246 68.3
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 8.0e-92 341.3 217 76.5
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.3e-91 339.7 227 74.0
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 2.0e-90 336.7 216 76.9
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 2.0e-90 336.7 213 76.1
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 2.6e-90 336.3 227 71.8
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 7.5e-90 334.7 208 77.9
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 7.5e-90 334.7 220 70.9
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 2.8e-89 332.8 198 78.3
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.8e-88 330.1 225 74.2
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 2.9e-86 322.8 207 73.9
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 5.0e-86 322.0 234 67.1
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 1.6e-84 317.0 251 65.3
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 2.1e-84 316.6 211 72.0
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 1.7e-81 307.0 225 67.6
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 3.5e-79 299.3 214 66.8
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 1.7e-78 297.0 210 67.1
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 1.4e-75 287.3 169 82.8
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 1.2e-74 284.3 185 74.1
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 3.4e-74 282.7 210 70.0
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 1.7e-73 280.4 225 65.8
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 1.1e-72 277.7 215 64.7
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 1.1e-72 277.7 212 70.8
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 2.4e-72 276.6 208 65.9
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 3.2e-72 276.2 155 84.5
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 3.5e-71 272.7 188 72.3
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 1.5e-69 267.3 256 56.2
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 3.6e-68 262.7 255 54.5
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 1.8e-67 260.4 175 72.0
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 3.4e-66 256.1 244 54.1
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 4.1e-64 249.2 235 57.0
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 3.9e-62 242.7 233 57.9
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 5.4e-56 222.2 158 72.2
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 3.3e-53 213.0 136 78.7
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.2e-52 211.1 212 54.2
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 4.4e-50 202.6 135 74.1
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 6.0e-47 192.2 111 87.4
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 7.3e-45 185.3 196 49.5
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 2.8e-44 183.3 184 48.9
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 1.1e-43 181.4 249 45.0
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 1.5e-37 161.0 192 44.3
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 3.3e-37 159.8 101 70.3
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 7.3e-37 158.7 188 44.1
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 4.0e-35 152.9 123 62.6
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 4.9e-33 146.0 175 45.7
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.6e-26 123.6 66 89.4
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 7.6e-26 122.1 194 38.1
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 2.1e-23 114.0 74 75.7
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 9.3e-16 88.6 76 63.2
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.6e-12 77.8 89 49.4
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 4.1e-11 73.2 78 50.0
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 4.1e-11 73.2 43 74.4
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 1.3e-09 68.2 187 28.3
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.4e-08 64.7 90 31.1
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 2.7e-07 60.5 144 29.2
Cre03.g144084 Chlamydomonas reinhardtii HOM05D000659 ORTHO05D000505 3.6e-07 60.1 150 30.7
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 3.6e-07 60.1 162 31.5
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 7.9e-07 58.9 166 30.1
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 1.0e-06 58.5 144 28.5
Rhsim04G0157700 Rhododendron simsii HOM05D000659 ORTHO05D000505 1.3e-06 58.2 144 28.5
BraA10t44950Z Brassica rapa HOM05D000659 ORTHO05D000505 1.8e-06 57.8 156 31.4
Medtr1g101310 Medicago truncatula HOM05D000659 ORTHO05D000505 1.8e-06 57.8 173 26.6
Gohir.D09G150900 Gossypium hirsutum HOM05D000659 ORTHO05D000505 2.3e-06 57.4 142 30.3
Gorai.006G172200 Gossypium raimondii HOM05D000659 ORTHO05D000505 2.3e-06 57.4 142 30.3
Peaxi162Scf01327g00137 Petunia axillaris HOM05D007017 ORTHO05D008784 2.3e-06 57.4 147 29.3
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 2.3e-06 57.4 147 29.3
MSTRG.5657 Avicennia marina HOM05D000659 ORTHO05D000505 3.0e-06 57.0 148 30.4
A10p29020 Brassica napus HOM05D000659 ORTHO05D000505 3.0e-06 57.0 156 30.8
ECA236G3352 Erigeron canadensis HOM05D000659 ORTHO05D000505 3.0e-06 57.0 87 37.9
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 3.9e-06 56.6 156 30.8
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 3.9e-06 56.6 154 29.9
arahy.Tifrunner.gnm1.ann1.SNC62Y Arachis hypogaea HOM05D000659 ORTHO05D000505 5.1e-06 56.2 146 31.5
arahy.Tifrunner.gnm1.ann1.VFZ35Y Arachis hypogaea HOM05D000659 ORTHO05D000505 5.1e-06 56.2 146 31.5
BcaC06g32457 Brassica carinata HOM05D000659 ORTHO05D000505 5.1e-06 56.2 156 30.1
HanXRQChr04g0125491 Helianthus annuus HOM05D000659 ORTHO05D000505 5.1e-06 56.2 74 40.5
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 5.1e-06 56.2 154 27.9
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 5.1e-06 56.2 108 31.5
BolC9t59681H Brassica oleracea HOM05D000659 ORTHO05D000505 6.7e-06 55.8 154 29.2
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 6.7e-06 55.8 148 29.7
Thecc.05G038300 Theobroma cacao HOM05D000659 ORTHO05D000505 6.7e-06 55.8 142 29.6
C09p69380 Brassica napus HOM05D000659 ORTHO05D000505 8.7e-06 55.5 154 30.5
BolC9t59682H Brassica oleracea HOM05D000659 ORTHO05D000505 8.7e-06 55.5 154 30.5
Ca_10788_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000505 8.7e-06 55.5 170 27.6
Duzib093G2115 Durio zibethinus HOM05D000659 ORTHO05D000505 8.7e-06 55.5 142 30.3
Gohir.A09G155400 Gossypium hirsutum HOM05D000659 ORTHO05D000505 8.7e-06 55.5 142 29.6
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 8.7e-06 55.5 143 27.3
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 8.7e-06 55.5 160 28.1


User provided reference genes

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