Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 6.6e-284 979.9 464 100.0
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-254 882.9 464 89.7
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.6e-159 564.7 462 58.2
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.6e-159 564.3 462 58.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 4.3e-158 562.0 462 59.1
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.1e-156 557.4 465 56.8
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 4.0e-156 555.4 465 56.8
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.1e-153 547.4 463 55.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.9e-153 546.6 463 55.9
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.4e-153 546.2 459 56.4
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 7.1e-153 544.7 463 55.7
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.5e-152 542.3 543 50.3
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.3e-151 539.7 464 55.8
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.8e-148 530.0 463 55.1
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.0e-147 526.6 460 53.9
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.4e-147 525.8 465 53.5
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.8e-146 522.3 463 53.1
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.6e-144 516.9 463 53.6
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 4.6e-144 515.4 424 55.9
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.0e-143 514.2 461 54.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.3e-142 508.8 464 52.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.6e-141 506.9 463 53.6
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 9.0e-140 501.1 407 59.0
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 7.1e-137 491.5 461 50.8
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 5.1e-135 485.3 458 50.7
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.5e-134 483.8 463 50.8
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.3e-134 482.6 462 49.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.3e-134 482.6 461 49.2
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 8.1e-133 478.0 463 51.0
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.1e-132 476.1 440 53.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.2e-130 469.9 459 49.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 2.9e-130 469.5 459 49.0
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 1.1e-129 467.6 461 49.7
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.7e-128 463.0 470 51.3
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 3.9e-127 459.1 459 50.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.1e-126 457.6 472 48.9
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.3e-125 454.1 460 48.9
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.6e-125 453.8 458 50.4
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 4.0e-124 449.1 461 48.6
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.2e-123 447.6 463 47.7
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 5.8e-123 445.3 513 45.4
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.6e-123 444.9 461 47.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.6e-123 444.9 461 47.3
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.0e-122 444.5 464 48.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.2e-121 439.5 469 47.5
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.1e-118 431.0 467 46.9
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.3e-117 427.6 463 45.1
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.6e-117 427.2 466 47.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 9.0e-116 421.4 474 47.0
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.6e-115 419.9 494 45.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 8.4e-114 414.8 464 46.8
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.9e-113 413.7 453 46.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.2e-112 411.0 465 44.5
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.0e-111 407.9 467 44.8
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.9e-111 406.0 436 48.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 5.1e-111 405.6 471 44.8
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.1e-110 404.4 436 48.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 7.4e-110 401.7 468 44.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.2e-109 400.2 436 48.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-108 397.9 448 44.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.4e-108 397.5 457 47.0
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 5.3e-108 395.6 457 47.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.2e-107 394.4 383 51.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.2e-106 390.2 379 50.1
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 3.8e-106 389.4 463 44.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-106 389.4 463 44.1
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 8.5e-106 388.3 467 44.3
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.9e-105 387.1 463 44.3
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.2e-105 385.2 463 44.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.2e-101 371.7 464 42.9
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 8.2e-101 371.7 530 40.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.3e-100 369.0 385 47.0
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.2e-99 367.9 498 40.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.0e-99 367.1 464 41.8
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.6e-99 366.7 444 44.8
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 3.4e-99 366.3 464 41.8
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.9e-99 365.5 476 40.8
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-98 364.0 464 41.6
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-98 362.8 494 40.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.9e-97 360.5 468 40.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.5e-97 359.0 461 40.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.2e-97 358.6 418 43.5
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 6.1e-96 355.5 458 40.6
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 7.4e-94 348.6 461 40.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.4e-94 348.6 460 40.9
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.2e-93 347.1 460 39.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.2e-93 347.1 461 39.7
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.8e-93 345.9 466 40.3
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-92 344.7 461 39.9
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.4e-92 343.6 459 38.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.1e-92 343.2 466 38.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.5e-91 339.7 461 42.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.0e-90 338.2 360 48.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.2e-90 337.0 458 42.1
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 5.0e-90 335.9 458 40.6
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.9e-89 334.0 481 38.3
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-89 334.0 459 40.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.9e-89 334.0 472 39.6
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 7.2e-89 332.0 391 45.0
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.6e-88 330.9 478 38.9
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.6e-88 330.9 478 38.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 4.0e-87 326.2 457 38.5
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 8.8e-87 325.1 458 39.5
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.0e-86 323.9 474 38.8
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.6e-86 323.6 479 38.0
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 6.3e-85 318.9 453 38.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.4e-84 317.0 478 38.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.6e-83 314.3 310 51.6
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.5e-83 313.2 265 55.5
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.2e-82 310.5 466 38.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.8e-82 309.7 478 36.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.7e-80 303.5 461 38.2
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 4.7e-80 302.8 455 37.1
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 8.0e-80 302.0 433 38.6
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 8.0e-80 302.0 468 38.2
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 6.3e-77 292.4 460 37.4
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 6.3e-77 292.4 460 37.4
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 8.3e-77 292.0 460 38.9
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.8e-76 290.8 460 36.5
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.1e-76 289.7 459 37.7
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 7.0e-76 288.9 387 42.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 9.1e-76 288.5 459 37.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.9e-75 285.8 385 40.0
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 7.7e-75 285.4 459 37.5
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.3e-74 284.6 260 52.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.1e-73 281.6 465 37.2
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.7e-72 276.9 257 52.9
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.8e-71 274.2 318 44.7
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 7.5e-70 268.9 431 36.0
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 8.3e-69 265.4 490 33.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.4e-68 264.6 488 35.0
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.2e-68 261.9 335 42.1
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.5e-67 259.6 464 37.1
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 5.2e-63 246.1 499 31.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.7e-62 242.7 304 44.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.3e-61 241.5 316 41.5
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.7e-61 241.1 496 31.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.5e-59 233.4 308 41.6
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 3.3e-57 226.9 497 32.0
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.5e-57 225.3 308 41.9
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 8.0e-56 222.2 455 31.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 2.9e-53 213.8 250 40.0
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.6e-51 208.0 293 40.6
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 3.3e-49 200.3 357 33.1
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.5e-46 191.4 305 39.7
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.3e-41 173.7 138 57.2
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 4.4e-38 163.3 149 53.7
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.6e-38 162.5 202 45.5
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.2e-37 161.0 130 57.7
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.9e-37 160.6 196 45.4
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 2.1e-27 127.9 88 68.2
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.7e-27 127.5 423 26.2
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 6.9e-23 112.8 292 26.7
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.6e-17 93.2 120 39.2
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 9.0e-15 85.9 138 36.2
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.8e-14 83.2 173 29.5
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.2e-12 77.4 84 40.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.2e-12 77.4 110 40.0
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.1e-11 74.7 70 52.9
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.0e-10 72.4 63 54.0
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.6e-08 65.1 87 40.2
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 2.8e-08 64.3 98 48.0
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 3.7e-08 63.9 48 58.3
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 3.1e-07 60.8 39 69.2
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 4.0e-07 60.5 96 42.7
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 9.0e-07 59.3 78 39.7


User provided reference genes

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