Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.6e-239 832.0 553 100.0
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.6e-146 523.1 550 65.5
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 5.5e-144 515.4 555 64.9
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.1e-143 513.5 540 58.5
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.8e-142 510.4 538 66.5
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.1e-141 507.7 552 67.4
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 2.5e-141 506.5 579 62.0
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 5.7e-141 505.4 557 69.1
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 1.3e-140 504.2 550 66.5
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 3.1e-139 499.6 552 64.5
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 5.9e-138 495.4 529 65.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.9e-137 493.0 550 63.3
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 6.5e-137 491.9 540 64.3
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 6.5e-137 491.9 560 64.3
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.1e-136 491.1 552 66.3
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.5e-136 488.8 542 62.0
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.7e-135 486.5 551 63.0
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.9e-134 482.6 542 65.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.7e-134 481.9 549 65.6
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 8.8e-134 481.5 547 58.9
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.0e-133 480.3 558 61.3
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.5e-133 479.9 548 61.7
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 7.4e-133 478.4 522 65.9
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 7.4e-133 478.4 545 60.2
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.7e-132 476.1 547 64.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 4.8e-132 475.7 545 64.6
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.8e-131 473.8 552 62.1
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.4e-131 473.4 549 63.9
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.1e-131 472.6 534 61.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.1e-131 472.6 534 65.9
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.2e-130 471.1 566 63.3
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.0e-130 470.3 568 63.0
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 7.7e-130 468.4 565 61.9
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.2e-128 463.0 543 53.0
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.6e-127 460.7 587 60.5
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.7e-127 459.1 550 61.6
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 7.9e-127 458.4 552 61.2
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 7.9e-127 458.4 537 60.7
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 2.3e-126 456.8 534 64.6
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 6.7e-126 455.3 554 59.9
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.5e-125 454.1 580 59.1
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 7.4e-125 451.8 589 58.2
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-124 451.1 531 62.3
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-124 451.1 530 62.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.3e-124 451.1 559 61.4
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 6.3e-124 448.7 547 64.2
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.1e-123 448.0 539 62.2
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 4.1e-123 446.0 545 65.0
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 5.3e-123 445.7 609 56.5
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 5.3e-123 445.7 543 63.9
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.2e-122 444.5 551 57.7
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.0e-122 443.7 538 62.1
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.6e-122 443.4 553 59.0
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.5e-122 443.0 546 59.5
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 4.5e-122 442.6 533 60.4
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.0e-121 441.4 536 52.4
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-121 441.0 547 61.2
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 3.8e-121 439.5 559 57.4
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.0e-121 439.1 546 60.4
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 6.5e-121 438.7 539 61.6
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 8.5e-121 438.3 544 59.6
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.1e-120 438.0 581 56.3
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 4.2e-120 436.0 536 61.8
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 9.4e-120 434.9 533 63.4
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.2e-119 434.5 537 59.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.6e-119 434.1 542 59.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 3.6e-119 433.0 565 55.9
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 4.7e-119 432.6 541 60.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 4.7e-119 432.6 560 56.6
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.8e-118 430.6 546 58.6
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.8e-118 430.6 542 60.9
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.8e-118 430.6 534 53.6
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 4.0e-118 429.5 528 64.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 6.7e-118 428.7 536 60.4
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.8e-118 428.3 537 59.4
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.5e-117 427.6 548 57.7
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.0e-117 427.2 541 58.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 2.0e-117 427.2 541 59.0
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.4e-117 426.0 550 59.3
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.4e-117 426.0 542 58.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 7.5e-117 425.2 562 52.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 7.5e-117 425.2 536 56.9
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.3e-116 424.5 601 60.4
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 8.2e-116 421.8 583 58.5
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-115 421.4 543 59.1
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 1.1e-115 421.4 534 56.9
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.4e-115 420.2 548 56.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 4.1e-115 419.5 560 56.1
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 4.5e-114 416.0 574 56.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.3e-113 414.5 588 54.9
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 2.2e-113 413.7 555 49.9
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.9e-113 413.3 580 58.1
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 3.8e-113 412.9 554 60.5
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.2e-111 407.9 545 62.4
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 2.7e-111 406.8 549 58.5
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.2e-110 402.5 532 57.0
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 5.2e-110 402.5 544 53.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 2.8e-108 396.7 527 53.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.7e-106 390.2 528 48.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 4.5e-106 389.4 546 55.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 8.5e-105 385.2 541 49.4
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.2e-102 375.9 507 48.7
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.6e-101 373.6 540 57.6
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.2e-100 370.5 471 58.8
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.9e-100 369.4 546 55.5
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.1e-99 368.2 558 55.2
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.4e-93 346.7 367 65.7
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 4.1e-91 339.7 520 52.7
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.9e-88 330.9 576 56.6
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 9.8e-85 318.5 345 64.3
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 1.4e-78 298.1 550 47.5
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.1e-78 297.0 517 43.1
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 8.9e-78 295.4 523 45.3
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 7.1e-75 285.8 533 47.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 8.6e-73 278.9 261 59.4
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 8.6e-73 278.9 496 45.8
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.2e-68 264.2 375 53.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 7.8e-66 255.8 580 34.5
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 2.4e-59 234.2 157 78.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 6.6e-57 226.1 354 57.3
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 3.1e-54 217.2 147 76.9
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.5e-53 214.9 211 59.7
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 3.0e-49 200.7 252 51.2
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.1e-48 198.7 125 86.4
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.3e-47 195.3 261 46.0
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.6e-47 194.9 245 47.3
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.8e-41 174.9 264 48.5
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.5e-40 171.8 398 47.2
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-36 157.1 188 51.6
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-36 157.1 188 51.6
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 7.9e-34 149.4 256 39.1
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.3e-31 142.1 101 76.2
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 2.3e-25 121.3 99 59.6
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.9e-25 120.6 146 52.1
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 4.1e-22 110.5 153 50.3
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.5e-20 102.8 62 80.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 7.4e-16 89.7 255 30.2
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 9.7e-16 89.4 77 59.7
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-15 89.0 85 56.5
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 2.8e-15 87.8 75 62.7
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 8.2e-15 86.3 88 58.0
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 6.9e-14 83.2 72 68.1
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-11 75.5 100 47.0
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 9.4e-11 72.8 69 59.4
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 6.1e-10 70.1 62 66.1
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-08 65.9 67 55.2
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.7e-08 63.5 37 78.4
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.4e-08 63.2 73 50.7
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.8e-07 61.2 67 55.2


User provided reference genes

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