Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 3123.2 1700 100.0
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1827.4 1731 65.6
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1761.9 1730 63.3
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1663.7 1740 61.1
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1661.7 1751 59.4
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1654.4 1732 60.5
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1642.5 1733 60.6
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1641.7 1724 60.1
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1640.6 1739 60.7
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1640.2 1728 60.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1637.5 1728 60.4
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1636.3 1728 60.4
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1635.2 1726 60.3
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1632.5 1665 59.3
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1580.5 1728 59.1
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1572.0 1740 59.2
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1566.6 1721 59.3
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1557.7 1738 58.8
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1555.0 1723 58.7
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1553.5 1740 57.8
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1552.0 1734 57.8
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1551.2 1739 57.4
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1550.8 1728 57.3
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1544.6 1740 58.9
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1544.3 1528 64.6
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1533.9 1727 57.7
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1531.2 1724 58.8
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1525.8 1821 56.5
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1523.8 1717 57.8
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1521.5 1747 56.9
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1518.8 1751 56.8
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1518.4 1749 56.8
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1513.0 1718 58.0
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1504.6 1767 55.3
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1498.0 1727 57.1
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1476.5 1722 55.0
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1476.1 1937 52.9
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1467.2 1726 54.3
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1466.1 1701 57.2
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1439.9 1704 56.3
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1420.6 1767 53.1
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1410.2 1622 57.8
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1404.8 1785 52.7
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1386.7 1419 62.2
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1380.2 1762 53.4
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1368.6 1715 54.5
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1359.0 1720 53.7
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1354.0 1740 52.4
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1350.9 1530 58.4
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1340.5 1746 51.1
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1339.7 1758 51.6
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1336.2 1819 50.5
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1327.0 1725 52.8
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1322.0 1784 51.7
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1313.1 1725 52.1
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1305.0 1719 49.2
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1299.3 1163 68.3
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1295.0 1310 63.9
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1293.9 1803 50.4
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1272.7 1493 54.3
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1271.9 1750 49.1
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1266.1 1704 49.3
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1255.4 1704 49.6
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1229.5 1240 63.0
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1226.1 1250 62.5
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1225.7 1691 50.0
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1219.1 1413 56.6
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1177.2 1728 46.6
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1175.6 1253 60.4
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1140.2 1253 59.1
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1120.9 956 67.5
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1115.1 1493 53.2
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1110.1 1278 56.3
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 1.9e-304 1050.0 1253 56.1
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 9.7e-301 1037.7 1779 44.3
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.0e-294 1017.7 1522 47.8
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.3e-281 974.2 950 62.1
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 7.5e-277 958.4 1043 62.2
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 2.4e-275 953.4 825 65.9
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 1.7e-252 877.5 1137 50.9
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 3.8e-252 876.3 1487 45.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.1e-234 817.4 1507 43.3
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 8.7e-233 812.0 1219 48.9
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 4.4e-184 650.2 1084 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 3.5e-165 587.4 885 43.6
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 9.2e-150 536.2 731 50.1
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 7.8e-141 506.5 556 57.2
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.3e-140 505.8 867 43.9
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 5.4e-126 457.2 1194 33.9
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.8e-114 418.3 729 43.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 4.2e-86 324.7 744 39.0
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 7.2e-78 297.4 720 35.3
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 2.9e-71 275.4 258 56.2
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 8.5e-71 273.9 235 62.6
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 5.5e-62 244.6 498 38.0
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 5.6e-54 218.0 232 52.6
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.3e-50 206.8 215 56.7
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.0e-40 172.9 171 54.4
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 5.0e-39 168.3 111 73.9
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.6e-37 163.3 165 58.8
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 5.2e-36 158.3 148 57.4
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-31 142.9 284 34.2
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 5.1e-31 141.7 1338 23.1
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.3e-30 139.0 131 64.9
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.7e-24 119.4 295 35.6
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.3e-23 117.1 227 33.0
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-23 116.3 105 59.0
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 2.4e-20 106.3 279 28.0
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 5.2e-20 105.1 157 43.3
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 2.6e-19 102.8 139 47.5
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.3e-18 100.5 203 39.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 4.6e-16 92.0 91 56.0
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-14 85.1 64 54.7
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 7.3e-14 84.7 79 55.7


User provided reference genes

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