Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 3.5e-266 921.0 451 100.0
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.2e-90 337.0 465 43.7
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 9.1e-89 331.6 464 43.5
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.2e-84 315.8 476 41.6
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 3.9e-79 299.7 454 39.6
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.6e-77 294.3 460 39.1
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.3e-76 290.4 462 39.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 2.0e-75 287.3 443 38.4
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.0e-75 287.3 464 40.3
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.3e-74 284.6 451 39.0
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 3.7e-74 283.1 451 38.6
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.4e-73 279.3 440 38.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.6e-72 277.7 472 37.9
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 6.6e-71 272.3 457 36.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 6.6e-71 272.3 463 37.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.5e-70 270.4 463 37.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.3e-70 269.6 463 36.9
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 4.3e-70 269.6 453 38.4
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.2e-69 268.1 429 39.2
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.6e-69 267.7 374 42.8
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.4e-68 264.6 449 37.9
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.4e-68 264.6 475 36.6
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 4.0e-68 263.1 466 35.6
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 6.8e-68 262.3 460 37.0
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 8.9e-68 261.9 457 36.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.2e-67 261.5 457 34.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 3.4e-67 260.0 472 36.7
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.4e-67 260.0 475 36.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 4.4e-67 259.6 442 36.2
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 5.8e-67 259.2 449 39.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 7.5e-67 258.8 409 39.9
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 4.9e-66 256.1 476 35.1
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 4.9e-66 256.1 449 35.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.4e-65 254.6 481 36.4
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.4e-65 253.8 464 34.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 4.1e-65 253.1 434 36.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 7.0e-65 252.3 464 37.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 7.0e-65 252.3 429 37.3
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-64 251.1 457 34.6
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.1e-64 250.8 428 37.6
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.1e-64 250.8 380 41.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.5e-64 250.0 453 35.8
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.6e-64 249.6 453 35.8
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.0e-63 248.4 457 35.9
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.7e-63 247.7 478 35.1
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.3e-63 247.3 457 35.7
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 3.0e-63 246.9 478 35.1
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.0e-63 246.9 457 34.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 3.9e-63 246.5 464 36.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 5.1e-63 246.1 457 35.9
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 6.6e-63 245.7 430 37.0
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.5e-62 244.6 457 35.2
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 4.7e-61 239.6 523 33.3
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.4e-60 238.0 441 36.3
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 6.8e-60 235.7 439 35.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.2e-59 235.0 374 40.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.0e-59 234.2 441 36.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.4e-59 233.4 437 35.2
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.7e-58 231.1 528 33.0
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 2.9e-58 230.3 436 35.3
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 3.7e-58 229.9 461 34.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 4.9e-58 229.6 461 35.4
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 8.3e-58 228.8 547 30.5
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.4e-57 227.3 447 34.7
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 7.1e-57 225.7 472 34.7
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.2e-56 224.9 482 32.0
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.6e-56 224.6 305 44.9
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.1e-56 224.2 392 35.2
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.3e-55 221.5 462 33.1
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 3.0e-55 220.3 456 33.3
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 6.6e-55 219.2 471 31.4
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 1.5e-54 218.0 470 33.8
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.5e-54 218.0 470 33.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.3e-54 216.9 458 33.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.1e-53 214.2 458 32.8
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.6e-53 213.4 479 33.8
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 4.7e-53 213.0 457 33.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 6.2e-53 212.6 483 31.7
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 8.1e-53 212.2 483 32.3
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.4e-52 210.7 457 31.9
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-52 210.7 457 33.7
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.4e-52 210.7 470 32.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.9e-52 208.8 469 33.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.0e-51 207.6 375 35.5
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.0e-51 207.6 457 32.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.4e-51 206.5 482 31.5
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.4e-51 206.5 485 31.1
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 9.9e-51 205.3 390 35.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 2.9e-50 203.8 452 29.4
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.9e-50 203.0 424 36.6
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.9e-49 201.1 482 31.1
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.4e-49 200.7 463 32.8
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.1e-48 197.6 505 31.5
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.1e-48 197.6 294 41.5
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 3.5e-48 196.8 452 34.5
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-47 194.9 454 31.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 2.3e-47 194.1 417 32.9
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 6.6e-47 192.6 478 32.6
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 8.7e-47 192.2 380 36.3
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-46 191.4 421 32.5
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.3e-46 189.1 501 31.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 9.6e-46 188.7 426 31.2
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.6e-45 186.8 417 31.9
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 4.8e-45 186.4 451 30.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 4.8e-45 186.4 420 32.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 8.1e-45 185.7 310 40.3
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.1e-44 185.3 418 31.8
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.4e-44 184.9 455 30.3
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.8e-44 184.5 464 32.5
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.4e-44 184.1 446 29.8
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 9.0e-44 182.2 446 29.6
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 9.0e-44 182.2 469 29.2
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.6e-43 180.6 421 32.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.4e-43 180.3 471 29.5
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.9e-43 178.7 469 29.6
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.9e-43 178.7 469 29.6
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.9e-42 177.2 419 31.0
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 8.4e-42 175.6 458 31.9
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.1e-41 175.3 465 29.5
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.9e-41 174.5 420 31.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.4e-41 174.1 421 30.2
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.2e-41 173.7 440 31.1
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.4e-41 172.9 432 30.8
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 7.1e-41 172.6 465 29.7
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.2e-40 171.8 464 30.2
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.6e-40 171.4 419 31.0
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 3.5e-40 170.2 448 28.6
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 6.0e-40 169.5 481 27.9
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.1e-39 166.4 321 33.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 8.7e-39 165.6 262 39.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.5e-38 164.9 459 30.9
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 3.6e-37 160.2 309 35.0
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.1e-36 158.7 324 33.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.0e-36 156.8 461 28.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.5e-35 154.8 419 30.8
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.8e-34 150.2 341 33.1
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.9e-34 149.8 194 43.8
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.1e-33 148.7 352 31.8
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.1e-32 144.4 313 32.3
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.7e-32 144.1 282 34.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.8e-31 141.4 294 36.1
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.1e-28 132.1 271 35.1
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 6.9e-28 129.4 446 24.4
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 3.4e-27 127.1 247 35.6
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.1e-22 112.1 266 31.6
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.5e-22 111.7 191 36.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 9.6e-22 109.0 427 26.0
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.0e-20 103.6 152 42.1
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.9e-17 94.7 140 42.1
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.5e-14 85.1 118 42.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.5e-14 85.1 123 39.0
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.9e-14 84.7 189 32.3
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 9.7e-14 82.4 292 24.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 8.2e-13 79.3 136 34.6
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.4e-09 68.6 101 36.6
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.1e-08 64.7 86 40.7


User provided reference genes

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