Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 3.1e-198 694.9 345 100.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 4.9e-159 564.7 327 86.9
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.2e-157 560.1 341 83.9
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 3.5e-157 558.5 325 85.8
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 7.8e-157 557.4 325 84.9
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 6.6e-156 554.3 320 87.2
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 1.1e-155 553.5 322 86.6
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.5e-155 553.1 325 85.2
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.3e-154 550.1 319 85.6
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 6.2e-154 547.7 322 84.8
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.1e-153 547.0 313 86.3
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.4e-153 546.6 309 87.4
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.8e-153 546.2 314 86.0
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.4e-153 545.8 331 83.4
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 5.3e-153 544.7 309 86.1
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 6.9e-153 544.3 326 83.1
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.2e-152 543.5 309 86.4
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 1.5e-152 543.1 322 84.2
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 7.6e-152 540.8 346 79.8
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 7.6e-152 540.8 322 84.8
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 1.3e-151 540.0 346 79.8
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 1.3e-151 540.0 314 86.0
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 2.2e-151 539.3 323 84.2
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 3.8e-151 538.5 340 80.3
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 4.9e-151 538.1 345 79.4
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 4.9e-151 538.1 307 86.0
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 4.9e-151 538.1 307 86.6
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 4.9e-151 538.1 307 86.6
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 8.4e-151 537.3 312 86.2
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.4e-150 535.8 309 86.7
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 2.4e-150 535.8 308 86.4
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 3.2e-150 535.4 347 79.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 7.1e-150 534.3 307 86.3
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 1.2e-149 533.5 318 84.9
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 1.2e-149 533.5 319 83.1
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 1.6e-149 533.1 308 85.7
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 2.1e-149 532.7 319 83.7
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 2.1e-149 532.7 316 84.5
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 2.1e-149 532.7 308 85.1
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 3.5e-149 531.9 318 84.6
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 1.0e-148 530.4 307 85.0
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.3e-148 530.0 342 79.2
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.3e-148 530.0 307 85.0
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.8e-148 529.6 316 84.2
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 2.3e-148 529.3 322 83.5
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 3.0e-148 528.9 341 79.8
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 3.9e-148 528.5 307 84.7
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 6.7e-148 527.7 308 85.4
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 6.7e-148 527.7 308 85.4
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 1.1e-147 526.9 307 85.0
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 4.3e-147 525.0 307 84.0
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 7.4e-147 524.2 347 79.3
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.6e-146 523.1 308 85.1
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.1e-146 522.7 346 76.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 2.8e-146 522.3 307 84.7
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 2.8e-146 522.3 325 80.6
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 3.1e-145 518.8 318 82.1
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 6.9e-145 517.7 307 84.0
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 9.0e-145 517.3 366 74.9
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 7.6e-144 514.2 319 81.2
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 7.6e-144 514.2 326 81.3
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 2.4e-142 509.2 310 81.9
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.7e-141 505.8 313 80.5
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 4.6e-141 505.0 297 84.5
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.0e-140 503.8 313 82.1
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.9e-139 499.6 313 81.5
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 2.5e-139 499.2 305 80.7
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.8e-137 493.0 304 80.9
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 7.6e-136 487.6 307 77.5
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 2.2e-135 486.1 331 76.7
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.8e-132 476.5 312 79.2
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.5e-131 473.4 321 76.9
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-131 473.0 312 79.8
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 1.9e-131 473.0 344 72.1
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 2.8e-130 469.2 324 75.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 4.8e-130 468.4 499 55.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 8.2e-130 467.6 276 85.5
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 1.8e-129 466.5 307 77.9
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 4.1e-129 465.3 311 77.5
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.2e-128 463.8 364 65.9
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 2.6e-128 462.6 298 77.5
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.3e-127 460.3 319 72.7
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 4.2e-126 455.3 315 73.7
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 5.7e-123 444.9 289 78.9
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.3e-122 443.7 309 77.0
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 8.2e-122 441.0 419 58.9
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.1e-121 438.7 308 71.4
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 9.1e-121 437.6 259 83.0
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.9e-118 429.9 305 71.5
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.6e-117 426.8 306 69.0
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.5e-115 420.2 252 82.1
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 2.0e-115 419.9 319 66.8
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 3.3e-115 419.1 262 82.4
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 2.8e-114 416.0 240 87.1
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.3e-113 411.8 266 77.8
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 1.2e-112 410.6 307 71.0
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.2e-112 410.6 305 72.1
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 6.5e-111 404.8 256 79.7
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 2.1e-109 399.8 296 66.2
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.6e-104 383.6 255 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 5.9e-104 381.7 263 71.5
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.3e-98 364.0 244 75.4
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 2.8e-98 362.8 219 81.3
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.2e-94 349.4 321 59.5
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.0e-92 342.4 228 73.2
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 4.4e-91 339.0 220 76.8
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 6.3e-90 335.1 307 61.2
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 5.0e-87 325.5 299 56.2
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 7.3e-78 295.0 184 80.4
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 7.5e-75 285.0 177 79.7
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 4.6e-72 275.8 211 72.0
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 3.0e-71 273.1 317 47.6
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.8e-68 263.8 488 38.3
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.2e-66 256.9 158 80.4
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 1.5e-62 244.2 153 77.1
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 5.6e-62 242.3 157 78.3
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 1.2e-61 241.1 143 84.6
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 9.2e-57 224.9 120 90.0
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 6.0e-56 222.2 120 89.2
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.2e-48 198.0 228 52.2
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 7.3e-46 188.7 113 80.5
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.1e-41 174.9 270 35.6
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.9e-39 166.4 102 78.4
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 2.9e-34 150.2 287 33.1
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.8e-28 131.0 66 92.4
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 5.3e-28 129.4 324 27.2
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.4e-25 120.6 63 92.1
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.7e-24 117.1 58 96.6
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.0e-23 115.2 70 78.6
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 2.3e-23 114.0 56 96.4
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 8.7e-23 112.1 56 94.6
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.3e-22 110.2 57 93.0
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 2.2e-18 97.4 62 79.0
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 4.8e-13 79.7 60 65.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 5.9e-11 72.8 43 81.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.8e-10 70.1 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 1.4e-07 61.6 55 58.2
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.3e-07 60.8 144 29.2
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.5e-06 58.2 121 30.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 4.3e-06 56.6 130 30.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 7.4e-06 55.8 139 30.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.4e-06 55.8 144 28.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 7.4e-06 55.8 102 33.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 7.4e-06 55.8 111 30.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 7.4e-06 55.8 109 29.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 9.7e-06 55.5 144 28.5
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 9.7e-06 55.5 111 29.7


User provided reference genes

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