Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 0.0e+00 1195.6 592 100.0
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 2.4e-291 1005.0 592 81.1
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 7.8e-290 1000.0 593 81.3
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 9.9e-285 983.0 596 80.2
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 8.4e-284 979.9 597 79.4
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.9e-283 978.8 593 79.6
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 3.5e-282 974.5 595 78.5
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.9e-280 968.8 593 79.1
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 8.1e-279 963.4 593 78.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 3.1e-278 961.4 593 78.4
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 5.3e-278 960.7 593 78.8
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.0e-277 958.7 592 78.0
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.2e-274 949.5 593 76.6
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.7e-274 948.3 593 76.7
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 2.7e-274 948.3 593 77.7
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 2.3e-273 945.3 593 76.7
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 3.3e-272 941.4 593 76.7
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 3.3e-272 941.4 593 76.2
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 4.3e-272 941.0 593 76.2
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 7.4e-272 940.3 597 76.4
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 3.7e-271 937.9 593 75.5
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 8.2e-271 936.8 593 76.4
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 6.5e-268 927.2 594 75.3
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.4e-267 926.0 593 75.4
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 3.2e-267 924.9 601 75.0
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 7.1e-267 923.7 596 76.0
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 1.8e-265 919.1 632 72.0
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.5e-264 915.2 596 73.8
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 9.0e-262 906.7 595 73.9
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.6e-261 903.7 580 75.9
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 5.0e-260 901.0 598 72.7
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.5e-260 900.2 595 73.1
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.4e-259 899.4 592 73.3
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.5e-259 898.7 630 70.5
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.6e-258 896.0 592 72.6
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 8.8e-257 890.2 592 72.6
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.9e-256 889.0 595 72.4
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 3.3e-256 888.3 633 69.7
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.3e-255 886.3 602 70.9
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 8.2e-255 883.6 591 73.4
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.1e-254 883.2 596 71.5
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 2.4e-254 882.1 592 71.6
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 2.4e-254 882.1 669 65.9
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 5.3e-254 880.9 592 71.1
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.4e-253 878.2 593 72.5
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 5.0e-252 874.4 615 70.2
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 3.9e-249 864.8 554 76.4
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.5e-248 862.8 553 76.9
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 4.4e-248 861.3 596 71.1
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 4.4e-248 861.3 594 70.4
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 1.3e-247 859.8 593 71.7
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.3e-247 859.8 595 70.6
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 3.8e-244 848.2 592 70.1
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.5e-244 847.0 595 70.1
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.5e-244 847.0 595 70.3
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.0e-240 835.9 646 65.6
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.7e-239 832.8 589 69.3
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 1.4e-238 829.7 593 66.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 3.8e-236 821.6 569 69.2
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 5.0e-236 821.2 597 68.5
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 8.5e-236 820.5 594 69.4
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 7.2e-235 817.4 594 66.2
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 8.0e-234 813.9 594 65.8
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 5.7e-232 807.7 536 73.3
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 1.7e-228 796.2 595 64.2
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 5.0e-228 794.7 595 64.9
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 5.0e-228 794.7 597 67.2
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 6.5e-228 794.3 652 63.3
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.5e-227 793.1 593 67.8
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.9e-227 792.7 585 68.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 5.7e-224 781.2 546 70.9
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.0e-222 774.2 601 65.6
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.7e-220 769.6 530 70.6
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 2.9e-220 768.8 595 62.4
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 8.6e-220 767.3 593 63.7
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.9e-219 766.1 595 62.9
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 9.5e-219 763.8 606 65.5
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.6e-218 761.9 597 62.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 6.1e-218 761.1 598 63.2
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.3e-217 759.2 592 62.8
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.2e-217 758.1 528 69.7
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 2.6e-216 755.7 578 66.3
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 2.6e-216 755.7 599 65.6
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 4.4e-216 755.0 593 62.9
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 7.5e-216 754.2 595 62.2
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.1e-214 750.4 518 71.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.4e-214 750.0 596 61.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 4.1e-214 748.4 595 61.3
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.2e-210 736.9 509 71.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.7e-210 734.9 484 74.0
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 5.2e-209 731.5 595 60.7
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 6.8e-209 731.1 688 57.3
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 3.2e-206 722.2 614 60.4
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.9e-203 713.0 572 63.6
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 5.2e-201 704.9 554 62.1
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 9.6e-171 604.4 530 59.4
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.3e-162 577.4 379 74.4
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.0e-143 512.3 390 64.6
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.7e-141 506.5 607 47.1
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.4e-124 451.1 519 50.5
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.1e-123 448.0 433 52.9
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.5e-118 431.0 596 40.1
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 3.6e-101 373.2 245 73.9
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 2.8e-85 320.5 251 60.2
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 3.6e-85 320.1 291 58.8
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.5e-83 314.7 205 74.1
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-74 282.7 618 33.7
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 4.2e-65 253.4 175 67.4
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 5.6e-46 189.9 161 60.2
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.6e-40 171.8 129 62.8
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 1.0e-34 152.5 119 60.5
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 5.0e-34 150.2 113 69.0
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.8e-31 141.7 81 75.3
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 4.6e-24 117.1 69 72.5
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 5.0e-18 97.1 83 59.0
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 4.2e-17 94.0 313 26.8
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 2.1e-16 91.7 52 88.5
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 7.0e-12 76.6 55 60.0
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 1.7e-10 72.0 44 68.2
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 3.2e-09 67.8 381 22.8
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 8.8e-07 59.7 44 63.6
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 8.8e-07 59.7 61 50.8


User provided reference genes

Program Settings