Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.3e-261 904.4 441 100.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.9e-192 676.0 443 74.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.3e-191 673.3 443 74.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 6.2e-191 671.0 453 72.0
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 4.5e-189 664.8 443 73.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.1e-187 660.2 440 71.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.2e-187 658.7 455 70.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.3e-183 646.7 441 70.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.9e-182 641.0 441 70.3
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 9.0e-182 640.6 445 69.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.8e-181 637.9 427 71.9
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.8e-180 635.2 443 68.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.3e-177 626.7 444 69.6
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.0e-177 625.5 443 68.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.3e-176 622.1 443 68.4
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.3e-176 621.7 442 68.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.6e-175 619.8 445 67.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.8e-175 618.2 451 67.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 8.2e-175 617.5 399 74.2
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.4e-174 616.7 442 67.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.1e-174 615.5 445 67.2
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.9e-174 614.4 444 67.3
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.9e-174 614.4 444 67.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 6.9e-174 614.4 445 66.7
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.9e-172 609.0 442 67.4
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.8e-172 608.6 441 67.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.9e-171 606.3 442 67.2
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.1e-170 602.8 398 72.1
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.0e-169 600.5 442 67.2
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.3e-169 600.1 445 66.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.7e-169 597.8 442 64.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.9e-168 596.3 440 66.6
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 9.7e-168 594.0 444 66.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.6e-167 593.2 437 65.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.8e-167 592.4 449 65.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.7e-167 592.0 441 65.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 8.2e-167 590.9 440 66.1
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.2e-167 590.9 447 65.5
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.4e-166 590.1 441 66.2
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.3e-166 588.2 441 65.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 6.9e-166 587.8 442 65.8
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.3e-164 583.6 428 67.8
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.7e-164 583.2 441 65.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.2e-163 578.6 410 65.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.2e-163 578.6 439 64.2
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-162 576.2 442 64.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-162 576.2 442 64.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-162 576.2 444 64.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 4.6e-162 575.1 440 64.5
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 7.9e-162 574.3 446 64.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-161 573.9 441 63.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-161 572.8 441 64.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 8.8e-161 570.9 510 57.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 4.3e-160 568.5 448 63.2
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 7.4e-160 567.8 438 63.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.1e-158 563.9 695 45.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.1e-158 563.9 444 62.6
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.3e-158 561.6 452 62.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-157 560.5 439 63.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.1e-155 553.9 410 66.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.9e-155 553.1 441 61.7
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.2e-155 552.4 415 67.0
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.1e-154 549.7 440 62.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.0e-153 545.8 396 66.4
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.1e-153 545.0 453 60.5
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.1e-152 543.9 441 60.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.3e-152 542.3 426 61.3
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.3e-152 542.3 440 60.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.4e-152 542.0 423 66.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 9.7e-152 540.8 432 64.8
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.7e-152 540.8 451 61.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-151 540.0 427 64.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.8e-151 539.3 397 65.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.4e-150 537.0 395 64.6
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-150 536.6 429 64.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.4e-150 536.2 440 59.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 4.1e-150 535.4 441 61.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.7e-149 531.2 432 63.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-148 530.0 415 65.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.8e-148 528.9 447 59.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.8e-148 528.9 513 53.6
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.0e-148 528.5 440 58.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 5.0e-148 528.5 478 57.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.9e-147 526.6 444 59.9
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.2e-147 525.8 395 65.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.2e-147 525.8 395 65.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.7e-146 522.7 439 60.4
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.7e-146 522.7 477 56.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.0e-145 520.8 448 60.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.4e-145 520.4 477 56.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.8e-145 520.0 441 58.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.0e-145 519.2 477 56.6
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.9e-145 518.8 400 64.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.9e-145 518.8 394 64.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-144 517.3 444 56.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.5e-144 516.9 397 61.7
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-144 516.2 426 57.7
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.6e-144 516.2 448 60.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.3e-144 515.8 437 60.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.4e-144 515.4 424 58.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.7e-144 515.0 410 60.7
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.7e-144 515.0 459 58.6
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.7e-144 515.0 397 61.5
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-143 513.1 426 57.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.2e-143 513.1 426 57.7
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.8e-143 512.7 440 56.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.1e-142 508.8 481 57.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 4.1e-142 508.8 400 59.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 9.1e-142 507.7 445 58.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.6e-141 506.1 479 56.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.9e-141 505.0 443 57.3
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.9e-141 505.0 447 59.3
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.0e-140 504.2 317 75.1
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.3e-140 503.8 427 57.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 6.5e-140 501.5 392 62.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.5e-139 499.6 405 62.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-139 499.2 441 56.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-139 499.2 441 56.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.2e-139 499.2 441 56.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 4.2e-139 498.8 436 56.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.2e-139 498.8 396 59.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-138 497.3 442 56.6
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-138 497.3 400 60.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.6e-138 496.9 442 56.6
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-138 496.9 440 57.3
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.7e-138 496.1 444 58.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.0e-137 494.2 399 61.2
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.0e-137 494.2 455 57.4
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-137 493.0 398 59.5
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.3e-137 493.0 426 56.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.3e-137 493.0 446 57.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.8e-137 491.5 327 71.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-135 486.5 425 56.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.8e-135 486.1 403 58.1
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.7e-135 485.7 325 70.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.5e-133 479.2 451 53.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.7e-133 478.0 560 48.0
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.0e-129 465.7 444 55.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.5e-125 452.6 394 57.9
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.3e-124 450.7 358 62.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.5e-123 446.4 405 55.6
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 8.3e-119 431.4 325 63.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.4e-118 430.6 313 63.6
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.0e-117 426.8 401 53.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.5e-115 419.9 399 52.6
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 8.6e-108 394.8 375 53.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 5.8e-88 328.9 261 60.9
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-87 326.6 218 71.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.7e-76 290.8 202 67.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.9e-76 289.7 235 60.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 8.1e-74 282.0 232 61.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.1e-70 268.9 216 57.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-68 263.5 203 64.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.5e-64 251.1 235 54.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.6e-61 239.6 310 42.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-58 231.5 410 39.3
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-49 200.7 272 42.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 9.0e-49 198.7 419 33.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 5.7e-35 152.9 123 60.2
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.6e-32 144.1 261 38.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.5e-30 137.5 180 42.8
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.6e-29 133.7 286 30.8
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-26 125.2 133 51.9
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.2e-24 118.6 116 50.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.3e-23 115.2 102 54.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 8.5e-23 112.5 554 23.5
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 4.2e-22 110.2 122 53.3
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-15 88.6 98 52.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.8e-15 87.0 80 56.2
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 8.8e-12 75.9 371 25.1
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.4e-11 73.9 66 56.1
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.6e-08 65.1 50 56.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.0e-07 62.4 51 58.8
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.8e-07 60.5 36 80.6


User provided reference genes

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