Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 0.0e+00 1746.9 931 100.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.8e-309 1065.8 891 63.2
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.0e-296 1023.5 891 60.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.5e-295 1019.6 890 61.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.6e-295 1018.8 891 60.4
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.3e-294 1016.5 891 60.2
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 4.8e-294 1014.6 890 61.0
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.4e-293 1012.3 890 60.8
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.5e-291 1003.8 889 60.5
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.3e-288 995.7 899 59.2
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 4.4e-287 991.5 889 59.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 7.0e-285 984.2 903 58.1
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.7e-284 982.2 930 57.7
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 5.0e-283 978.0 897 58.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.6e-281 971.8 892 58.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.4e-279 964.9 890 58.1
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.7e-279 964.5 892 57.6
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.8e-276 954.1 887 57.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.6e-273 946.4 889 60.4
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 4.9e-270 934.9 911 55.3
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 4.1e-269 931.8 890 56.4
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-268 929.5 890 56.3
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.0e-268 929.5 894 54.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.7e-267 926.4 878 55.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 3.0e-267 925.6 892 54.8
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.8e-264 916.4 908 57.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 4.4e-263 911.8 880 56.4
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.9e-262 908.3 884 55.7
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.2e-261 904.0 890 55.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.8e-260 901.0 890 55.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-259 899.8 892 54.5
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 8.6e-259 897.5 883 54.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.1e-257 892.9 860 57.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 7.6e-255 884.4 894 53.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.2e-254 882.9 862 55.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.4e-253 879.4 924 53.8
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.2e-252 877.1 899 54.2
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 7.8e-252 874.4 890 54.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 1.3e-251 873.6 764 59.7
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.1e-251 871.7 890 52.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 5.1e-251 871.7 889 53.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-250 870.5 910 52.9
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.3e-250 868.6 863 54.6
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.6e-249 865.5 859 54.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.4e-248 862.8 917 52.5
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.1e-248 862.4 890 51.8
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.0e-247 859.8 891 52.6
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.8e-247 858.2 863 54.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 4.9e-246 855.1 877 53.5
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 8.4e-246 854.4 890 53.4
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 5.4e-245 851.7 908 51.5
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.4e-245 851.7 888 53.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.6e-243 844.7 887 51.9
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-240 837.0 901 51.8
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.1e-240 835.9 918 51.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 9.9e-239 830.9 886 51.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.0e-235 820.8 889 51.4
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.3e-235 819.7 891 50.5
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.0e-232 808.9 897 50.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 7.6e-231 804.7 891 51.9
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 3.5e-228 795.8 839 51.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.1e-224 784.3 942 48.1
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.4e-224 783.9 855 51.2
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.4e-224 783.1 895 51.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 4.5e-223 778.9 954 47.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.5e-221 771.9 855 48.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.5e-220 769.2 832 51.6
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.0e-219 767.7 635 63.6
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.8e-219 766.9 893 47.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.5e-218 763.1 888 47.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.1e-216 755.7 922 47.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-214 750.4 892 49.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-214 750.4 892 48.9
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.2e-209 733.4 875 46.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.3e-209 731.9 911 48.4
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.2e-205 719.2 885 48.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.8e-203 713.8 886 46.5
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.0e-203 713.0 858 47.9
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 5.9e-199 698.7 856 45.0
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 2.9e-198 696.4 855 45.3
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-195 688.0 905 45.7
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 2.3e-195 686.8 897 44.0
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.7e-195 685.3 1345 36.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.3e-194 682.9 892 46.0
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.8e-185 652.5 674 52.7
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.0e-183 647.1 860 44.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 7.7e-183 645.2 867 45.7
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-180 637.5 862 44.5
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.6e-180 637.5 862 44.5
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.7e-177 626.3 860 44.0
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 4.8e-177 625.9 1390 33.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.8e-177 625.9 860 44.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.8e-177 625.9 860 43.8
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-176 624.0 860 43.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.1e-176 621.7 855 43.0
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.7e-175 620.2 798 41.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.0e-174 618.2 861 42.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.2e-174 617.1 861 42.5
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.2e-174 617.1 759 47.3
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.8e-174 616.3 876 42.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 6.5e-174 615.5 860 42.9
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-172 610.5 860 42.8
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.8e-171 607.4 492 64.4
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.0e-170 604.0 913 43.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.9e-166 590.1 719 44.5
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.3e-165 586.3 862 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.2e-164 584.7 888 39.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.1e-160 569.7 875 41.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 9.2e-160 568.5 577 55.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.6e-158 562.0 909 42.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.1e-148 528.9 866 40.8
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.7e-145 520.0 412 65.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 9.5e-141 505.4 466 56.9
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.8e-140 503.8 878 38.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.4e-131 474.2 337 71.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.3e-125 453.8 638 42.9
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.5e-117 428.3 447 52.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.4e-112 411.8 321 63.6
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 2.7e-111 407.5 313 65.2
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.9e-105 386.7 424 50.2
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-101 373.6 813 34.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.7e-94 349.7 790 31.8
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-93 349.0 395 49.1
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.5e-93 347.8 1100 25.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.3e-93 347.4 363 51.5
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.1e-91 342.4 389 50.9
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-91 341.3 404 46.5
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.5e-90 338.6 357 49.9
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.0e-86 324.3 270 61.1
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.1e-83 314.3 441 42.0
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.5e-82 312.0 345 49.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.7e-81 308.5 622 33.1
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.2e-80 303.9 414 43.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 9.7e-77 292.7 399 43.9
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.5e-72 278.1 478 37.7
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-69 268.9 250 53.6
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 8.2e-68 263.1 304 47.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-64 252.7 485 36.1
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 8.0e-63 246.5 259 50.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 5.2e-62 243.8 195 60.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 3.5e-58 231.1 285 47.4
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.8e-54 216.5 178 60.1
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 4.3e-48 197.6 192 57.8
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 9.5e-48 196.4 474 34.6
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-47 196.1 343 36.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.7e-42 178.3 139 65.5
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.6e-39 169.1 319 36.1
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.1e-39 168.7 153 53.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-38 165.2 351 31.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.4e-37 161.4 146 58.2
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 9.2e-35 153.3 178 53.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.7e-34 151.8 119 59.7
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.9e-33 147.9 151 51.0
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.3e-32 144.8 213 41.3
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.2e-31 142.9 116 59.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.8e-31 141.7 243 35.8
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-28 132.5 100 67.0
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.2e-28 132.1 192 41.1
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.9e-28 131.7 81 76.5
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.2e-26 126.3 89 71.9
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.0e-25 123.2 88 64.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-23 115.9 136 54.4
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.6e-23 114.8 131 48.9
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 6.2e-23 114.0 113 48.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 8.1e-23 113.6 80 71.2
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.1e-22 113.2 81 64.2
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.1e-22 111.7 91 58.2
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 4.0e-22 111.3 218 39.0
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 3.8e-20 104.8 113 45.1
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-18 98.6 125 46.4
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 4.6e-18 97.8 105 47.6
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.0e-13 82.4 113 39.8
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.7e-12 79.3 96 39.6
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 9.3e-11 73.6 84 51.2
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.6e-10 72.8 59 55.9
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 3.5e-10 71.6 907 19.1
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 7.8e-10 70.5 48 64.6
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 1.3e-09 69.7 71 50.7
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 7.3e-08 63.9 96 36.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 9.6e-08 63.5 49 59.2
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.6e-07 62.8 56 48.2
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 2.8e-07 62.0 72 51.4
Glyma.04G168200 Glycine max HOM05D003469 ORTHO05D004084 2.4e-06 58.9 48 68.8
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.1e-06 58.5 74 48.6


User provided reference genes

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