Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.6e-178 629.4 340 100.0
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.7e-82 309.3 352 55.4
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.6e-56 223.4 393 42.0
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 6.7e-52 208.8 421 38.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.3e-50 204.5 495 34.5
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.1e-49 199.5 384 39.6
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 4.1e-49 199.5 460 37.8
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 5.3e-49 199.1 420 38.1
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 5.3e-49 199.1 342 41.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 4.5e-48 196.1 395 36.5
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.7e-47 194.1 388 40.7
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.5e-46 191.0 375 39.5
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.7e-45 186.0 407 37.6
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 8.0e-45 185.3 362 38.7
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.0e-44 184.9 415 34.7
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-44 183.7 457 35.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 8.8e-44 181.8 434 35.0
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 5.7e-43 179.1 409 34.5
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.3e-42 177.9 410 35.1
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.2e-42 177.2 397 39.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.4e-41 174.5 440 37.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.4e-41 174.5 345 37.7
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.4e-41 174.5 446 35.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-41 174.1 454 34.4
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 9.1e-41 171.8 283 45.9
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.1e-41 171.8 285 45.3
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.2e-40 171.4 345 38.8
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.6e-40 171.0 389 33.2
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.7e-40 168.7 274 45.6
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 7.7e-40 168.7 345 37.1
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.7e-39 167.5 443 34.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 2.2e-39 167.2 339 38.9
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-39 166.8 271 45.8
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 6.5e-39 165.6 341 37.0
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.9e-38 164.1 407 34.4
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.9e-38 164.1 397 37.8
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.5e-38 163.7 337 41.2
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.2e-38 163.3 367 35.1
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.0e-36 156.8 357 34.5
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.2e-36 156.0 413 35.6
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 6.8e-36 155.6 442 32.6
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-35 154.5 338 35.8
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.0e-35 154.1 381 34.4
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 3.4e-35 153.3 353 32.6
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 4.4e-35 152.9 430 32.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 9.8e-35 151.8 429 31.9
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 9.8e-35 151.8 376 31.9
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 9.8e-35 151.8 485 33.0
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.8e-34 150.2 347 33.4
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 2.8e-34 150.2 425 32.2
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 3.7e-34 149.8 397 33.2
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-33 148.3 418 31.6
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.4e-33 147.9 369 32.8
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.4e-33 147.1 368 35.6
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.4e-33 147.1 368 35.6
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 3.1e-33 146.7 410 32.2
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.1e-33 146.7 433 29.1
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 4.1e-33 146.4 460 30.9
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 5.4e-33 146.0 376 34.6
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.4e-33 146.0 449 33.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 7.0e-33 145.6 417 33.1
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-32 144.4 441 31.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-32 144.1 455 30.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.9e-32 142.5 406 32.5
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 2.3e-31 140.6 463 30.0
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 8.6e-31 138.7 393 30.3
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.5e-30 137.9 459 30.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.5e-30 137.1 379 34.0
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.5e-30 137.1 229 41.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 5.6e-30 136.0 452 31.2
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 7.2e-30 135.6 456 29.6
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 9.5e-30 135.2 205 42.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.2e-29 134.8 426 31.7
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.6e-29 134.4 473 30.4
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.8e-29 133.7 353 34.0
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 6.1e-29 132.5 497 29.0
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 8.0e-29 132.1 234 41.5
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 8.0e-29 132.1 455 29.7
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.0e-28 131.7 456 27.9
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.0e-28 131.7 378 33.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.0e-28 131.7 378 33.9
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.4e-28 131.3 458 28.6
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.4e-28 131.3 458 28.6
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.4e-28 131.3 365 32.9
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 2.3e-28 130.6 407 31.2
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.0e-28 129.8 322 32.9
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 6.8e-28 129.0 399 31.8
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.2e-27 128.3 102 59.8
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 2.6e-27 127.1 493 28.6
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 3.4e-27 126.7 417 30.5
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 4.4e-27 126.3 362 33.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 5.7e-27 125.9 421 29.2
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 7.5e-27 125.6 421 29.2
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 9.8e-27 125.2 433 29.8
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.3e-26 124.8 451 29.0
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.2e-26 124.0 102 58.8
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 3.7e-26 123.2 362 32.9
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 3.7e-26 123.2 171 46.8
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 4.9e-26 122.9 512 28.7
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.9e-26 122.9 204 40.7
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 4.9e-26 122.9 488 29.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 6.4e-26 122.5 483 25.7
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 6.4e-26 122.5 415 31.1
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 8.3e-26 122.1 442 28.7
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.4e-25 120.6 489 29.7
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 3.2e-25 120.2 129 49.6
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.2e-25 120.2 288 34.7
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 7.0e-25 119.0 243 39.1
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 9.2e-25 118.6 469 28.4
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.0e-24 117.5 426 32.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.0e-24 117.5 213 38.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 2.7e-24 117.1 129 49.6
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 7.8e-24 115.5 318 33.6
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.7e-23 114.4 179 41.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.3e-23 114.0 159 46.5
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.3e-23 114.0 475 27.8
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.0e-23 113.6 442 28.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.9e-23 113.2 173 45.1
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.0e-23 112.8 177 40.7
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 6.6e-23 112.5 179 41.3
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 8.6e-23 112.1 174 42.5
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.9e-22 110.9 190 41.1
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.5e-22 110.5 431 30.9
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.1e-21 107.5 204 39.7
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.8e-20 104.4 439 26.2
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.0e-19 100.9 405 27.9
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 3.4e-19 100.1 123 45.5
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.4e-19 100.1 336 31.8
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.4e-19 100.1 105 47.6
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.9e-17 94.4 311 29.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 4.6e-16 89.7 162 38.9
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 5.0e-15 86.3 304 31.6
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 6.6e-15 85.9 98 45.9
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.1e-14 85.1 150 38.7
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.8e-13 80.5 123 39.0
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 8.1e-13 79.0 73 56.2
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.3e-12 77.4 103 40.8
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.4e-11 73.6 398 25.6
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 4.9e-10 69.7 57 54.4
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.4e-10 69.3 51 58.8
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 1.2e-08 65.1 117 37.6
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 1.6e-08 64.7 113 38.1
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.7e-08 63.9 99 35.4
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 7.8e-08 62.4 102 33.3
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 2.3e-07 60.8 113 38.9
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 2.3e-07 60.8 113 38.9
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 3.0e-07 60.5 178 28.7
PGR004G1283 Punica granatum HOM05D004938 ORTHO05D006035 3.9e-07 60.1 113 37.2
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.1e-07 59.7 107 38.3
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 5.1e-07 59.7 123 37.4
Zm00001eb095260 Zea mays HOM05D004938 ORTHO05D006035 5.1e-07 59.7 118 37.3
Mapoly0156s0019 Marchantia polymorpha HOM05D004938 ORTHO05D006035 6.6e-07 59.3 116 33.6
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 6.6e-07 59.3 113 34.5
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 1.1e-06 58.5 115 36.5
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 1.1e-06 58.5 113 37.2
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.1e-06 58.5 115 37.4
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.1e-06 58.5 115 37.4
Sc13g0004170 Simmondsia chinensis HOM05D004938 ORTHO05D006035 1.1e-06 58.5 114 37.7
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.1e-06 58.5 108 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 1.5e-06 58.2 116 33.6
HPP92_016866 Vanilla planifolia HOM05D004938 ORTHO05D006035 1.5e-06 58.2 115 37.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 1.9e-06 57.8 109 34.9
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 2.5e-06 57.4 115 36.5
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.5e-06 57.4 97 39.2
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 2.5e-06 57.4 113 38.1
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 2.5e-06 57.4 113 36.3
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.5e-06 57.4 119 34.5
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 4.3e-06 56.6 58 48.3
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 4.3e-06 56.6 113 38.1
Eucgr.H03562 Eucalyptus grandis HOM05D004938 ORTHO05D006035 4.3e-06 56.6 113 35.4
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 4.3e-06 56.6 113 36.3
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 4.3e-06 56.6 62 43.5
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 5.6e-06 56.2 53 47.2
BcaC04g18583 Brassica carinata HOM05D004938 ORTHO05D006035 5.6e-06 56.2 115 35.7
C09p57000 Brassica napus HOM05D004938 ORTHO05D006035 5.6e-06 56.2 115 35.7
BolC9t58564H Brassica oleracea HOM05D004938 ORTHO05D006035 5.6e-06 56.2 115 35.7
Zm00001eb303240 Zea mays HOM05D004938 ORTHO05D006035 5.6e-06 56.2 113 38.1
Ah.13g073990 Amaranthus hybridus HOM05D004938 ORTHO05D006035 7.3e-06 55.8 117 36.8
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 9.5e-06 55.5 113 39.8
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 9.5e-06 55.5 300 29.7
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 9.5e-06 55.5 114 36.0
Duzib151G0907 Durio zibethinus HOM05D004938 ORTHO05D006035 9.5e-06 55.5 121 36.4


User provided reference genes

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