Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 2.5e-217 758.4 370 100.0
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 3.3e-193 678.3 368 89.4
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.1e-192 675.6 368 89.7
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.8e-191 672.5 368 88.9
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.0e-190 669.1 368 89.1
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.0e-190 669.1 368 88.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.1e-187 659.1 368 86.7
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.1e-187 659.1 370 85.7
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.7e-187 658.7 364 87.4
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.3e-186 656.4 366 86.9
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.7e-186 656.0 366 86.9
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-186 656.0 370 84.6
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 2.3e-186 655.6 368 87.2
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.3e-186 655.6 368 87.2
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 3.9e-186 654.8 368 86.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 6.6e-186 654.1 368 86.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 8.6e-186 653.7 370 83.8
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 8.6e-186 653.7 366 86.9
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.5e-185 652.9 370 84.9
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.5e-185 652.9 368 87.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.3e-185 651.7 366 85.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.6e-185 651.0 366 85.8
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 7.3e-185 650.6 368 86.1
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 7.3e-185 650.6 368 86.1
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 7.3e-185 650.6 380 83.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.1e-184 649.0 368 86.4
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 3.6e-184 648.3 368 86.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 4.7e-184 647.9 366 86.3
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 4.7e-184 647.9 368 85.3
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.8e-183 646.0 366 85.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.8e-183 646.0 373 85.0
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.3e-183 645.6 366 85.5
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.1e-183 645.2 368 84.2
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 3.1e-183 645.2 365 85.5
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 5.2e-183 644.4 368 84.8
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.2e-182 643.3 366 84.4
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.2e-182 643.3 368 85.6
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.0e-182 642.5 368 84.8
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 2.0e-182 642.5 368 83.7
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 2.6e-182 642.1 368 85.3
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.4e-182 641.7 368 83.2
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.4e-182 641.7 368 83.2
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 5.8e-182 641.0 368 84.2
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 9.9e-182 640.2 368 84.0
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.9e-182 640.2 368 85.3
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.3e-181 639.8 368 83.2
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.3e-181 639.8 368 84.8
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.7e-181 639.4 368 84.0
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.2e-181 639.0 368 82.6
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.9e-181 638.6 368 82.3
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.9e-181 638.6 366 84.4
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 3.7e-181 638.3 368 83.7
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 4.9e-181 637.9 368 83.4
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 4.9e-181 637.9 368 84.5
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 6.4e-181 637.5 407 77.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 6.4e-181 637.5 368 83.7
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 6.4e-181 637.5 366 83.9
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.1e-180 636.7 359 86.6
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.9e-180 636.0 368 85.9
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.9e-180 636.0 368 83.7
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.2e-180 635.2 368 84.0
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.2e-180 635.2 368 84.0
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.2e-180 635.2 366 83.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 4.1e-180 634.8 368 83.7
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 5.4e-180 634.4 370 85.1
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.1e-180 634.0 366 85.2
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.2e-179 633.3 368 83.4
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.2e-179 633.3 368 83.4
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.2e-179 633.3 368 83.7
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.5e-179 631.7 368 83.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 6.0e-179 630.9 364 82.4
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 1.7e-178 629.4 368 82.9
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.3e-178 629.0 362 84.5
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.3e-178 629.0 366 83.1
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 6.6e-178 627.5 366 84.2
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 8.6e-178 627.1 364 81.9
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 8.6e-178 627.1 364 81.9
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 8.6e-178 627.1 364 81.9
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 8.6e-178 627.1 364 81.9
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 8.6e-178 627.1 364 81.9
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.1e-177 626.7 379 81.5
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.9e-177 625.9 368 82.6
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 4.3e-177 624.8 366 82.8
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.2e-176 623.2 364 81.9
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.2e-176 623.2 368 83.2
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.6e-176 622.9 366 83.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 1.6e-176 622.9 368 83.2
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.8e-176 622.1 366 83.1
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-175 620.2 399 76.9
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.1e-175 620.2 366 83.6
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 1.8e-175 619.4 368 82.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 2.4e-175 619.0 366 82.5
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.4e-175 619.0 368 82.1
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.5e-174 616.3 364 80.2
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 3.4e-174 615.1 352 84.1
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 8.4e-173 610.5 355 83.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.1e-172 610.1 363 82.1
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.9e-172 609.4 366 80.9
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 4.2e-172 608.2 393 77.6
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.1e-172 607.4 364 81.6
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 2.3e-170 602.4 368 78.3
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 6.6e-170 600.9 364 79.7
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.5e-169 599.0 361 81.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 5.6e-169 597.8 346 84.1
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 9.6e-169 597.0 366 78.7
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.8e-168 595.5 347 84.1
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.8e-168 595.5 368 79.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.8e-168 594.7 366 80.6
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 6.2e-168 594.3 366 79.8
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 4.0e-167 591.7 349 81.9
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.0e-166 589.3 365 79.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.4e-166 588.6 366 78.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.7e-165 586.3 432 70.4
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.7e-165 586.3 368 79.6
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 4.2e-164 581.6 365 79.7
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 7.1e-164 580.9 369 77.2
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 7.1e-164 580.9 366 80.1
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 9.3e-164 580.5 365 78.1
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.5e-163 578.6 366 80.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 6.0e-163 577.8 362 77.6
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.7e-162 576.2 368 76.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.1e-162 574.7 368 76.9
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.6e-162 574.3 366 77.3
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.1e-161 573.5 369 76.2
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.3e-160 570.1 366 76.8
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.1e-160 569.3 363 78.0
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.8e-160 568.9 346 80.3
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 2.8e-160 568.9 366 76.8
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 4.8e-160 568.2 368 74.2
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 8.1e-160 567.4 364 74.5
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-159 566.6 364 74.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.6e-158 560.8 370 74.1
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.9e-157 558.1 366 75.4
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.1e-156 557.0 368 73.9
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.9e-156 556.2 347 79.8
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.5e-153 546.6 371 75.2
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 8.1e-152 540.8 390 72.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.1e-148 530.4 366 68.9
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 4.3e-145 518.5 357 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 4.8e-144 515.0 366 67.2
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.5e-142 510.0 368 67.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.5e-142 510.0 367 67.3
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.5e-142 508.4 369 66.7
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 7.6e-142 507.7 368 69.6
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 2.9e-141 505.8 366 65.6
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 6.5e-141 504.6 368 66.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 6.7e-138 494.6 367 64.6
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 6.9e-135 484.6 291 81.4
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.8e-133 478.8 275 82.9
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 5.0e-133 478.4 279 82.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.9e-132 476.5 328 72.6
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.2e-132 475.7 275 84.4
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.1e-131 473.0 286 79.7
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.7e-131 472.6 361 65.1
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 4.6e-131 471.9 368 67.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 3.1e-127 459.1 274 80.7
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 4.1e-127 458.8 276 81.9
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-125 453.4 330 69.1
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 7.2e-124 448.0 382 57.9
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.2e-118 430.6 277 76.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 2.2e-117 426.4 396 54.5
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.8e-117 425.6 364 55.8
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 5.5e-116 421.8 276 73.2
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 7.4e-113 411.4 356 55.6
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.3e-112 410.6 242 83.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.4e-111 407.1 287 69.0
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 8.6e-93 344.7 276 65.6
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.2e-91 340.9 195 85.6
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.2e-88 330.1 201 80.1
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 5.9e-86 322.0 178 87.1
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.6e-83 313.9 199 75.9
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 4.6e-70 269.2 168 79.2
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.0e-57 227.3 264 51.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.4e-50 204.5 373 33.0
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 2.7e-46 190.3 443 29.1
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 4.8e-43 179.5 114 79.8
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 6.2e-43 179.1 405 27.9
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 2.4e-42 177.2 120 70.0
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 9.0e-42 175.3 148 62.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 5.8e-41 172.6 120 68.3
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 2.4e-34 150.6 115 63.5
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 9.0e-34 148.7 299 30.8
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.5e-28 131.3 77 80.5
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 9.1e-10 68.9 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 4.5e-09 66.6 68 54.4


User provided reference genes

Program Settings