Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 7.5e-82 307.4 182 100.0
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.4e-66 255.0 184 75.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 7.5e-66 254.2 184 75.5
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.3e-65 253.4 185 74.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.8e-65 252.3 184 73.4
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 3.7e-65 251.9 184 73.4
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.9e-65 251.5 185 74.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 4.9e-65 251.5 185 74.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 6.3e-65 251.1 184 74.5
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.3e-65 251.1 184 75.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.4e-64 250.0 183 73.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.1e-64 248.8 185 71.9
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.4e-64 248.1 139 87.8
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.0e-64 247.7 178 71.3
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 9.2e-64 247.3 139 87.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 9.2e-64 247.3 178 73.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 71.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.6e-63 246.5 181 72.9
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.0e-63 246.1 184 70.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.7e-63 245.7 184 79.3
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.7e-63 245.7 183 72.1
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.7e-63 245.7 178 71.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.5e-63 245.4 184 71.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.5e-63 245.0 184 70.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 4.5e-63 245.0 184 79.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.9e-63 244.6 178 71.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.9e-63 244.6 178 71.9
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 7.7e-63 244.2 179 75.4
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.0e-62 243.8 139 85.6
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.3e-62 243.4 179 72.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-62 243.0 180 70.6
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.3e-62 242.7 137 86.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.3e-62 242.7 178 82.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.9e-62 242.3 184 71.2
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.9e-62 242.3 184 69.6
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.9e-62 242.3 139 84.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.9e-62 242.3 184 71.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.8e-62 241.9 184 70.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 71.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 71.9
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 71.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.0e-62 241.5 180 70.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.6e-62 241.1 178 71.9
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 8.6e-62 240.7 178 70.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 8.6e-62 240.7 178 70.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.1e-61 240.4 178 81.5
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.5e-61 240.0 179 72.6
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.5e-61 240.0 179 72.6
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.9e-61 239.6 182 70.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.9e-61 239.6 139 84.2
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.9e-61 239.6 178 70.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 182 69.8
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-61 239.2 178 71.3
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-61 239.2 178 71.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.5e-61 239.2 179 72.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.3e-61 238.8 182 68.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.3e-61 238.8 177 72.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.5e-61 237.3 178 82.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 9.5e-61 237.3 180 70.6
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-60 236.9 136 85.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 74.7
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.2e-60 236.9 179 70.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.6e-60 236.5 174 69.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 68.5
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.1e-60 236.1 179 70.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.1e-60 236.1 179 70.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-60 235.7 178 68.5
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.8e-60 235.7 178 68.5
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.8e-60 235.7 184 68.5
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.8e-60 235.7 139 82.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 3.6e-60 235.3 178 82.0
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-60 235.3 139 82.0
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.6e-60 235.3 178 69.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.6e-60 235.3 176 69.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.7e-60 235.0 136 85.3
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 6.1e-60 234.6 178 68.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 6.1e-60 234.6 178 68.0
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.0e-59 233.8 139 82.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.4e-59 233.4 176 77.3
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-59 233.4 182 68.1
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.8e-59 233.0 178 79.8
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.0e-59 232.3 141 83.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.0e-59 231.9 185 68.6
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 4.0e-59 231.9 140 81.4
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.2e-59 231.5 178 79.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.2e-59 231.5 139 79.9
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 5.2e-59 231.5 136 83.1
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 6.8e-59 231.1 176 69.3
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.8e-59 231.1 139 82.0
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 6.8e-59 231.1 175 68.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.2e-58 230.3 182 65.4
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.2e-58 230.3 180 68.9
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.5e-58 229.9 183 68.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.0e-58 229.6 131 84.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.3e-57 226.9 141 81.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.7e-57 225.3 185 67.6
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 6.4e-57 224.6 141 78.7
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.4e-57 224.6 140 80.0
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 8.3e-57 224.2 139 79.1
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-56 223.8 136 80.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.4e-56 223.4 185 66.5
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-56 222.2 177 71.2
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 4.1e-56 221.9 142 79.6
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.4e-56 221.5 141 78.0
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.4e-56 221.5 141 78.0
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 5.4e-56 221.5 140 79.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 7.0e-56 221.1 177 76.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 2.0e-55 219.5 141 78.0
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.7e-55 219.2 141 78.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.6e-55 218.4 141 79.4
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.0e-54 217.2 140 76.4
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.0e-54 217.2 140 75.0
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.7e-54 216.5 177 70.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.7e-54 216.5 135 77.8
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 3.0e-54 215.7 133 82.0
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.0e-54 215.7 140 74.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 5.0e-54 214.9 176 63.6
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 6.6e-54 214.5 137 76.6
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.6e-54 214.5 137 75.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.6e-54 214.5 186 63.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.5e-53 213.4 180 61.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.3e-53 211.8 139 74.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.1e-52 209.5 183 61.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.7e-52 208.4 182 61.0
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.0e-51 207.2 135 75.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 3.1e-51 205.7 135 74.8
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-50 203.4 141 71.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.9e-49 199.1 122 79.5
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.7e-49 198.7 173 58.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.4e-48 196.8 118 80.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 7.8e-47 191.0 134 69.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 6.6e-46 188.0 210 51.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-45 186.8 134 67.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.5e-45 186.0 134 67.9
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.8e-43 179.9 131 68.7
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.1e-43 179.1 126 65.9
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 4.0e-43 178.7 125 68.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 5.2e-43 178.3 138 66.7
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 6.8e-43 177.9 127 69.3
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.0e-38 162.5 89 86.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.2e-36 154.8 86 86.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.8e-35 151.4 86 83.7
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 9.9e-34 147.5 177 45.2
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-33 145.6 89 82.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.5e-31 139.0 141 51.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.6e-31 138.7 113 69.0
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.4e-27 126.3 114 61.4
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 5.2e-27 125.2 91 67.0
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.6e-26 122.9 99 62.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.4e-24 116.3 127 51.2
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.4e-24 115.2 77 74.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 8.7e-22 107.8 119 45.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 6.2e-20 101.7 76 71.1
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 6.2e-20 101.7 76 71.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.0e-19 99.0 95 44.2
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 6.4e-17 91.7 126 36.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-16 90.9 46 91.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.3e-13 79.3 80 53.8
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.3e-13 79.0 54 70.4
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.8e-12 75.5 53 69.8
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 9.0e-11 71.2 85 49.4
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.6e-10 69.7 61 60.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.8e-10 68.6 140 40.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 6.4e-09 65.1 90 37.8
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 3.9e-06 55.8 103 37.9


User provided reference genes

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