Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.6e-115 419.1 269 100.0
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.7e-109 398.3 269 96.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.0e-54 216.9 270 53.0
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.3e-53 214.2 270 51.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.2e-51 207.6 270 56.7
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 6.5e-50 201.8 270 48.9
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.1e-49 201.1 272 54.4
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 6.1e-48 195.3 249 50.2
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.0e-47 194.5 271 53.1
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.5e-46 190.7 263 51.7
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.4e-44 184.1 254 49.2
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.4e-44 183.3 217 49.8
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.1e-44 182.6 319 41.1
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.7e-43 179.9 271 51.3
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 4.5e-43 179.1 271 45.0
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 5.9e-43 178.7 271 49.8
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.9e-43 178.7 271 49.8
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.9e-43 178.7 216 50.9
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.8e-42 176.0 271 44.3
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-41 174.5 245 49.8
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 2.5e-41 173.3 248 49.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.2e-41 172.6 243 53.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.5e-41 172.2 235 54.9
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 7.2e-41 171.8 270 45.6
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.4e-39 167.5 344 39.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.2e-38 164.5 275 48.4
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.6e-38 163.3 248 44.4
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.4e-38 162.9 271 48.7
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 9.8e-38 161.4 270 43.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.7e-37 160.6 270 49.3
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.3e-37 158.3 270 48.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.0e-36 155.2 270 45.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 9.1e-36 154.8 252 46.0
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.5e-35 152.9 250 43.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.3e-34 150.2 229 45.4
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.1e-33 147.9 270 46.3
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.9e-33 147.1 206 50.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 9.5e-33 144.8 250 48.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.8e-32 143.3 247 42.5
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.0e-31 141.4 251 48.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.8e-31 140.6 196 48.0
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.3e-31 140.2 289 37.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.8e-31 138.7 187 55.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.2e-30 137.9 270 37.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 5.7e-30 135.6 188 45.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 5.7e-30 135.6 194 44.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 5.7e-30 135.6 270 43.3
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 5.7e-30 135.6 270 43.3
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.2e-29 133.7 246 41.9
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.2e-29 133.7 245 48.2
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.7e-29 132.9 251 44.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.9e-29 132.5 270 39.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 6.3e-29 132.1 218 44.0
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.1e-28 131.3 246 41.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 3.1e-28 129.8 225 44.0
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 5.4e-28 129.0 258 45.3
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-27 127.9 179 54.2
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-27 127.9 179 54.2
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.6e-27 127.5 269 36.4
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-27 126.3 234 48.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.5e-27 126.3 271 43.2
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.3e-26 124.4 272 40.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.8e-26 122.9 271 39.5
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 6.6e-26 122.1 260 40.0
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 5.6e-25 119.0 271 39.1
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 9.5e-25 118.2 205 41.5
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.7e-24 115.9 271 43.9
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.7e-24 115.9 326 32.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.0e-23 114.8 185 42.7
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.2e-22 111.3 270 40.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.0e-22 110.5 269 33.5
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 2.6e-22 110.2 269 32.3
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 3.4e-22 109.8 269 32.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.3e-21 107.8 202 39.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 1.7e-21 107.5 270 34.1
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.7e-21 107.5 269 32.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.2e-21 107.1 129 48.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.7e-21 106.3 251 36.7
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-20 104.8 258 42.2
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-20 104.8 258 42.2
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.4e-20 104.4 265 39.2
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.4e-20 104.4 268 34.7
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.8e-20 104.0 244 40.6
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.2e-20 103.2 268 34.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 5.4e-20 102.4 259 42.5
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 3.5e-19 99.8 269 33.8
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.5e-19 99.8 271 38.4
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.0e-18 98.2 165 40.6
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.3e-18 97.8 273 31.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.3e-18 97.8 270 33.0
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.0e-18 95.9 228 34.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.5e-17 93.6 271 33.6
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.5e-17 93.6 270 31.9
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.5e-17 93.6 268 31.0
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.6e-16 90.9 261 33.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.1e-16 90.5 218 34.4
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.8e-16 90.1 280 31.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 3.6e-16 89.7 182 37.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 6.2e-16 89.0 271 35.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.0e-16 88.6 261 38.7
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 8.0e-16 88.6 210 36.7
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 8.9e-15 85.1 270 32.2
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-14 84.7 271 30.6
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.6e-14 83.6 213 32.9
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 4.4e-14 82.8 270 36.7
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 7.5e-14 82.0 270 37.0
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.4e-13 79.0 116 42.2
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 6.4e-13 79.0 142 41.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 8.3e-13 78.6 117 44.4
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-12 78.2 127 40.2
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.9e-12 77.4 271 36.2
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 3.2e-12 76.6 268 30.6
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.4e-12 75.9 172 36.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-11 74.7 77 57.1
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.0e-11 73.9 266 31.2
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-10 71.2 117 42.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 3.0e-10 70.1 253 37.5
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 5.6e-09 65.9 269 27.1
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.1e-08 63.9 128 36.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.7e-08 62.8 247 28.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.2e-08 62.4 172 34.9
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 8.1e-08 62.0 205 29.3
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.3e-07 60.5 264 24.6
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.1e-07 60.1 128 35.9
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.1e-07 60.1 134 33.6
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 6.8e-07 58.9 259 36.3
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 6.8e-07 58.9 92 44.6
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.9e-07 58.5 269 28.3
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.5e-06 57.8 159 34.0
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 5.8e-06 55.8 218 28.4
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 9.9e-06 55.1 227 27.3


User provided reference genes

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