Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 2.3e-204 715.3 355 100.0
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 1.2e-165 586.6 351 80.3
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 2.1e-165 585.9 351 80.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 2.1e-165 585.9 353 79.3
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 3.6e-165 585.1 346 81.2
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 8.0e-165 583.9 351 80.1
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 1.1e-164 583.6 353 78.5
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.4e-164 583.2 351 80.1
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 3.1e-164 582.0 353 78.5
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 4.0e-164 581.6 348 80.2
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 4.0e-164 581.6 348 80.7
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 5.2e-164 581.3 351 79.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.5e-163 579.7 351 79.8
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.8e-163 577.8 351 79.5
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 1.3e-162 576.6 350 78.3
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 3.7e-162 575.1 353 79.3
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 8.3e-162 573.9 348 79.3
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.4e-161 572.4 353 76.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 3.2e-161 572.0 353 77.3
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 5.4e-161 571.2 350 78.6
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 9.2e-161 570.5 360 77.2
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 9.2e-161 570.5 350 77.7
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 1.6e-160 569.7 350 77.4
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.6e-160 569.7 348 78.2
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 1.6e-160 569.7 349 77.4
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.1e-160 569.3 363 76.6
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 3.5e-160 568.5 349 76.5
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 3.5e-160 568.5 351 76.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 3.5e-160 568.5 348 78.4
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 4.6e-160 568.2 354 77.4
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 4.6e-160 568.2 348 78.4
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 7.8e-160 567.4 351 78.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.0e-159 567.0 347 76.9
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.0e-159 567.0 346 79.8
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.3e-159 566.6 350 77.1
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 1.3e-159 566.6 348 78.4
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 1.7e-159 566.2 348 78.2
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.7e-159 566.2 353 77.3
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 2.3e-159 565.8 350 77.7
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 2.3e-159 565.8 349 76.2
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.0e-159 565.5 348 76.4
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 3.9e-159 565.1 346 77.7
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 5.1e-159 564.7 355 77.2
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 6.6e-159 564.3 349 75.9
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 8.6e-159 563.9 350 75.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.9e-158 562.8 349 76.8
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.9e-158 562.8 348 76.7
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.5e-158 562.4 348 77.3
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.5e-158 562.4 350 77.1
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 3.3e-158 562.0 352 78.1
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 4.3e-158 561.6 349 75.4
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.3e-158 561.6 350 75.1
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 4.3e-158 561.6 351 78.3
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 4.3e-158 561.6 350 76.0
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 7.3e-158 560.8 352 76.4
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 7.3e-158 560.8 347 76.1
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.2e-157 560.1 349 75.6
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.6e-157 559.7 352 75.9
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 1.6e-157 559.7 350 76.3
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.6e-157 558.5 348 75.9
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.3e-156 555.8 346 77.2
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.0e-156 555.1 347 76.7
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 5.2e-156 554.7 355 75.5
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.5e-155 553.1 348 76.7
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 1.5e-155 553.1 350 75.1
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 1.5e-155 553.1 343 77.0
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.4e-155 551.6 345 75.1
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.4e-155 551.6 355 74.6
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 5.8e-155 551.2 350 76.9
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 9.9e-155 550.4 355 74.6
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 2.2e-154 549.3 348 75.3
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 2.9e-154 548.9 346 75.7
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 3.7e-154 548.5 350 74.0
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 4.9e-154 548.1 348 75.3
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 8.3e-154 547.4 348 74.7
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 8.3e-154 547.4 352 75.6
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.4e-153 546.6 343 76.4
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 9.2e-153 543.9 342 76.3
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 9.2e-153 543.9 348 73.6
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 9.2e-153 543.9 339 77.0
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 2.1e-152 542.7 352 74.1
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.5e-152 542.0 348 75.0
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.3e-151 540.0 342 74.0
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.3e-151 540.0 348 75.0
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 3.0e-151 538.9 350 73.4
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 5.1e-151 538.1 352 73.6
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 5.1e-151 538.1 334 76.3
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 8.6e-151 537.3 346 74.9
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.5e-150 536.6 354 74.3
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.9e-150 536.2 352 73.3
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.3e-150 535.4 352 72.7
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 2.8e-149 532.3 351 72.9
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 3.6e-149 531.9 346 74.3
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 6.8e-148 527.7 351 73.8
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 2.0e-147 526.2 346 74.0
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 3.4e-147 525.4 347 73.5
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 4.9e-146 521.5 388 68.6
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 3.2e-145 518.8 346 72.5
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 9.2e-145 517.3 350 71.1
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 2.1e-144 516.2 387 66.4
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.1e-144 516.2 346 69.9
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.3e-142 508.8 368 67.7
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 4.3e-142 508.4 351 71.5
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 5.3e-140 501.5 349 71.3
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 9.0e-140 500.7 340 71.5
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.0e-139 499.6 357 70.0
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 3.8e-138 495.4 323 74.0
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.8e-132 476.5 345 66.7
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 2.6e-131 472.6 352 67.0
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.1e-129 467.2 287 78.4
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.6e-128 463.4 269 80.7
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 3.5e-128 462.2 350 64.0
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 2.4e-124 449.5 274 78.1
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 5.3e-124 448.4 333 62.8
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 6.9e-124 448.0 270 79.3
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.8e-119 433.3 350 63.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.4e-116 422.9 268 74.6
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 8.4e-114 414.5 268 75.0
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.4e-113 413.7 345 60.6
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.1e-112 409.8 270 73.0
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.2e-109 399.8 290 65.5
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.1e-108 397.5 340 58.8
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.2e-104 384.0 235 77.9
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 2.1e-104 383.3 268 67.2
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.1e-102 377.5 332 60.2
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 2.0e-99 366.7 247 72.1
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.4e-95 354.0 359 52.9
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.8e-95 353.6 285 62.1
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.3e-95 353.2 350 53.4
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 6.5e-90 335.1 352 51.7
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.0e-87 326.2 350 52.3
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 8.8e-87 324.7 210 72.9
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 3.1e-84 316.2 350 48.6
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 5.2e-79 298.9 345 48.4
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.5e-75 286.2 236 64.0
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 2.0e-67 260.4 209 66.0
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 5.5e-65 252.3 166 72.9
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 8.0e-64 248.4 220 59.1
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 6.8e-55 218.8 194 59.8
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 2.3e-50 203.8 131 74.0
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 8.9e-47 191.8 112 75.0
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 4.6e-35 152.9 115 65.2
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 1.2e-27 128.3 187 43.9
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 5.1e-26 122.9 70 80.0
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 4.4e-22 109.8 64 73.4
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.3e-18 98.2 68 63.2
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 1.5e-14 84.7 64 64.1
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 7.9e-11 72.4 44 70.5
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 1.9e-09 67.8 43 65.1
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 3.1e-07 60.5 81 46.9
CAN.G1057.11 Capsicum annuum HOM05D004929 ORTHO05D115892 6.9e-07 59.3 107 35.5


User provided reference genes

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