Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 0.0e+00 1718.0 938 100.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 9.5e-298 1026.9 965 63.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.2e-296 1021.1 953 62.6
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 9.8e-295 1016.9 952 63.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.3e-288 995.7 908 62.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.4e-278 961.1 959 59.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.2e-277 957.2 967 58.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.5e-276 955.3 959 59.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-275 953.7 960 59.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.6e-275 951.0 960 59.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.5e-274 949.9 955 60.6
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 4.7e-273 944.9 961 58.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-269 933.3 961 58.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.4e-269 931.4 969 58.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.0e-267 927.2 954 57.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.5e-266 922.5 954 58.8
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-260 903.7 955 56.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 7.9e-260 901.0 960 56.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.3e-254 883.6 910 56.0
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-254 883.6 914 59.0
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-254 883.6 904 59.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.9e-254 882.5 904 59.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.2e-253 878.6 946 57.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-251 872.5 960 53.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 8.7e-251 870.9 941 58.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.4e-250 867.8 960 53.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.4e-250 867.8 966 55.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 7.4e-250 867.8 903 57.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 7.6e-247 857.8 962 52.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.7e-243 844.7 934 54.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-242 844.0 969 54.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-242 844.0 971 54.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 8.2e-241 837.8 974 54.9
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.1e-240 835.9 947 52.5
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 9.0e-240 834.3 944 55.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.5e-239 832.0 943 55.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-237 827.0 967 53.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.8e-235 820.1 945 54.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.2e-233 813.1 944 54.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.7e-233 812.4 945 54.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.7e-231 804.7 963 52.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.2e-230 803.1 954 53.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-228 797.0 897 53.5
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-226 790.8 897 53.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.0e-226 790.0 962 50.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 4.4e-226 788.9 952 50.1
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.7e-226 788.5 897 53.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.1e-224 782.7 951 49.9
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.9e-222 776.2 647 66.5
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.1e-221 774.2 877 52.8
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.5e-221 773.1 970 50.4
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.2e-220 770.8 973 50.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.0e-219 767.7 958 52.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.9e-219 765.8 883 51.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.8e-214 749.2 906 51.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 7.2e-213 745.0 906 51.2
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.6e-212 742.7 906 52.5
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.0e-211 741.1 953 49.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.0e-211 739.2 983 48.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 7.0e-208 728.4 1031 47.2
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 9.1e-208 728.0 951 50.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.6e-207 727.2 956 48.8
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.0e-206 722.2 932 48.5
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 9.4e-205 718.0 944 49.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.2e-204 717.6 948 49.3
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.0e-202 710.3 925 48.1
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.7e-201 707.2 970 48.6
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.7e-201 706.1 903 48.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.4e-200 704.1 959 46.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.4e-200 703.4 915 48.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 7.0e-200 701.8 886 50.2
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-198 696.0 812 53.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.1e-196 690.3 881 47.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-195 685.6 895 51.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 8.8e-195 684.9 911 45.4
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.4e-194 682.9 929 46.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 9.8e-194 681.4 958 45.4
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.9e-191 672.2 961 46.0
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.6e-188 662.9 655 57.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.6e-188 662.9 954 45.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.6e-188 662.9 948 45.6
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-187 661.4 898 46.2
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.4e-187 661.0 927 44.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.0e-187 659.4 886 49.2
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.5e-186 657.5 953 44.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.0e-186 657.1 607 62.3
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.6e-186 656.8 898 46.0
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.7e-185 652.9 876 49.5
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 2.0e-183 647.1 939 47.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.0e-182 644.8 915 47.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-182 644.0 944 47.0
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.3e-182 643.7 905 47.4
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-182 643.3 897 46.5
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-181 641.3 934 48.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.0e-179 632.9 943 45.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.7e-177 627.5 954 44.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.1e-176 622.9 947 45.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.9e-174 616.3 928 44.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-170 603.6 967 43.6
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.3e-169 601.3 899 46.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.1e-168 596.3 914 43.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.6e-166 589.0 921 43.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.3e-165 586.6 875 46.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.5e-165 585.1 951 45.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.8e-164 583.6 874 45.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.6e-164 583.2 900 41.9
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.4e-163 581.3 944 44.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 6.8e-163 578.9 875 44.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-162 577.8 935 42.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.8e-161 573.2 891 43.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.9e-161 572.8 941 42.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.8e-159 565.5 953 43.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.8e-151 538.9 949 42.9
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.0e-150 538.5 506 61.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.3e-149 533.5 905 42.5
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-148 531.2 933 41.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 5.8e-146 522.7 953 41.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 7.6e-146 522.3 953 41.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-145 520.4 947 42.1
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 3.8e-145 520.0 948 42.2
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 5.4e-144 516.2 677 50.7
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-143 515.0 706 48.0
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-143 515.0 953 42.5
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-143 515.0 953 42.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.5e-143 513.5 947 42.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 8.7e-142 508.8 951 42.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-141 508.1 939 41.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 7.4e-141 505.8 951 41.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 9.6e-141 505.4 890 40.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.8e-140 503.8 900 39.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 6.2e-140 502.7 944 41.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.4e-138 496.9 941 38.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.2e-137 494.2 659 50.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.1e-135 487.6 950 39.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.4e-133 479.2 721 45.5
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.4e-131 474.2 824 42.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 5.1e-126 456.4 855 39.2
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-119 434.1 443 58.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.1e-115 422.2 1029 35.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 7.7e-114 416.0 827 37.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-108 398.3 926 34.1
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.8e-108 397.5 885 37.4
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 6.3e-108 396.4 469 51.2
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.1e-107 392.5 881 37.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.4e-102 378.6 632 43.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.5e-96 357.8 563 42.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.7e-95 353.6 338 58.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 2.0e-93 348.2 1044 34.3
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-92 345.1 943 32.8
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.4e-85 320.5 374 51.1
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-83 315.5 287 60.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.5e-80 303.5 341 61.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.8e-74 283.1 823 30.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.3e-72 277.7 809 31.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-70 272.7 961 31.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.8e-63 248.1 277 54.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.8e-63 248.1 396 44.7
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.2e-59 234.6 775 32.8
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-55 222.6 225 57.8
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.4e-51 209.1 278 48.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 3.8e-44 184.5 107 79.4
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.4e-43 180.6 369 35.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-41 176.0 549 32.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 4.3e-40 171.0 367 39.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-36 158.3 191 49.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.1e-35 156.4 274 39.8
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.5e-34 151.4 105 70.5
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.0e-34 150.6 277 39.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.7e-33 146.7 285 43.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-21 108.6 120 51.7
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 3.4e-21 108.2 90 71.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.2e-20 105.5 111 53.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.3e-16 91.7 138 45.7
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 9.6e-16 90.1 110 44.5
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.9e-14 84.0 90 50.0
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.5e-11 75.5 154 36.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.3e-11 73.6 46 69.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 8.7e-09 67.0 89 37.1
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.7e-08 64.3 121 41.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.7e-08 63.5 139 33.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.3e-07 63.2 122 41.0
FAN24G1497 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.3e-06 57.8 118 31.4
FAN20G0228 Fragaria x ananassa HOM05D000561 ORTHO05D000514 9.0e-06 57.0 118 31.4


User provided reference genes

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