Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 0.0e+00 1369.8 712 100.0
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.1e-257 892.5 681 67.8
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.7e-254 881.7 679 67.0
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.4e-253 879.8 683 68.1
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.5e-252 875.2 684 66.2
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 8.6e-251 870.5 685 67.0
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.3e-250 868.6 683 67.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 2.8e-249 865.5 686 65.9
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 8.9e-248 860.5 669 66.8
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.7e-246 856.3 683 66.2
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.2e-246 855.9 703 64.6
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 8.4e-246 854.0 702 64.5
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.1e-245 853.6 684 65.9
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.1e-245 853.6 684 65.9
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.5e-244 848.6 684 66.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 6.0e-244 847.8 715 63.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.5e-242 843.2 684 65.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.9e-242 842.8 672 64.9
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.9e-242 842.8 686 65.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 3.3e-242 842.0 690 64.3
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 5.6e-242 841.3 681 64.8
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.8e-241 839.0 696 64.8
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.2e-241 837.8 680 64.4
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-240 836.6 692 65.5
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-240 836.6 692 65.5
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.4e-240 836.6 678 65.8
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 2.4e-240 835.9 678 64.5
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 4.4e-239 831.6 680 64.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 7.6e-239 830.9 687 64.5
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 9.9e-239 830.5 684 63.9
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.9e-238 828.9 687 63.2
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.8e-238 828.6 683 64.3
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.1e-237 827.0 677 62.5
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.4e-237 825.9 676 63.8
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.6e-236 823.2 692 63.6
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.0e-236 821.2 694 63.0
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 3.0e-235 818.9 678 62.8
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 8.7e-235 817.4 685 63.1
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 3.3e-234 815.5 681 63.3
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.3e-234 815.5 678 61.8
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 4.3e-234 815.1 680 64.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.6e-233 813.1 684 64.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.8e-233 812.4 688 62.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 8.1e-233 810.8 690 61.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 8.1e-233 810.8 690 61.4
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 8.1e-233 810.8 687 61.1
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 6.9e-232 807.7 697 61.5
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 4.5e-231 805.1 673 62.0
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 5.8e-231 804.7 687 61.7
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.2e-230 802.7 682 61.9
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 6.4e-230 801.2 717 60.0
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.1e-229 800.4 682 61.7
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.9e-229 799.7 681 61.5
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 4.2e-229 798.5 717 60.0
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 2.1e-228 796.2 685 62.6
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.5e-228 795.4 741 59.9
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 4.6e-228 795.0 638 65.8
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 4.6e-228 795.0 663 61.2
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 7.9e-228 794.3 670 61.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.3e-227 793.5 692 61.0
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 2.3e-227 792.7 674 61.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.1e-226 790.4 683 62.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 7.4e-226 787.7 689 61.1
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.6e-225 786.6 688 60.3
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.5e-223 780.0 690 59.1
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.0e-223 779.6 652 61.7
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 3.8e-222 775.4 683 59.6
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 6.4e-222 774.6 684 59.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.4e-221 772.7 684 59.2
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.7e-220 769.2 672 60.7
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 6.0e-220 768.1 690 59.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 6.0e-220 768.1 686 59.0
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.0e-219 767.3 686 59.0
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.0e-219 767.3 690 59.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.0e-219 767.3 696 61.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 2.3e-219 766.1 687 59.0
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.9e-218 763.1 672 60.1
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.3e-217 760.4 698 60.7
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 3.7e-217 758.8 664 59.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.2e-214 749.6 711 56.1
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.7e-212 742.7 587 64.4
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 2.2e-209 733.0 690 56.4
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 2.2e-206 723.0 691 57.3
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 2.2e-206 723.0 691 57.3
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 4.2e-205 718.8 684 56.3
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.1e-204 716.5 693 56.9
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.4e-203 713.8 693 56.7
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.3e-201 704.9 1008 43.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.7e-198 696.8 717 55.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 7.9e-196 688.0 682 55.1
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.4e-195 687.2 512 67.8
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 6.7e-195 684.9 678 56.3
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-191 674.1 688 53.6
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 8.5e-182 641.3 449 69.7
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 3.6e-180 636.0 511 62.0
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.4e-179 634.0 685 49.3
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.3e-179 633.3 541 60.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 4.0e-179 632.5 826 45.2
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 2.8e-177 626.3 666 52.1
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.0e-175 620.2 716 48.3
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.0e-174 617.8 678 49.9
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.2e-173 612.8 698 47.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 5.4e-168 595.5 679 51.4
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 1.1e-152 544.7 436 63.1
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.3e-150 537.0 431 59.9
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 6.0e-143 512.3 541 53.2
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-142 510.8 570 50.9
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 3.4e-138 496.5 703 41.7
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.6e-132 477.6 555 50.3
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.3e-126 458.0 711 39.5
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 7.3e-125 452.2 711 37.8
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.3e-101 373.6 451 48.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.8e-100 370.5 535 37.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 2.9e-97 360.5 433 47.1
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.4e-97 359.0 408 53.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.1e-91 340.5 432 48.4
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.3e-89 335.1 296 59.1
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 6.5e-81 306.2 372 48.9
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-77 293.9 306 51.6
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-75 288.5 666 34.5
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.4e-69 266.9 785 30.4
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.6e-66 258.5 219 60.7
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 6.1e-63 246.5 262 58.0
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 9.7e-61 239.2 267 57.7
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-59 234.6 240 52.1
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 3.1e-59 234.2 265 56.6
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 5.9e-58 229.9 362 46.1
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 8.5e-57 226.1 265 55.5
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.5e-57 226.1 262 48.9
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-56 225.7 254 50.0
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 3.5e-50 204.1 235 57.4
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-49 200.7 198 52.5
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 3.7e-44 184.1 131 68.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 8.3e-44 183.0 139 64.0
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.6e-39 168.7 117 65.8
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 3.6e-39 167.5 106 70.8
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 3.5e-34 151.0 204 45.6
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.7e-33 148.7 169 47.3
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 6.2e-31 140.2 207 39.6
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 8.1e-31 139.8 117 59.8
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 3.4e-29 134.4 172 51.2
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 4.9e-28 130.6 105 61.9
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-27 129.4 103 62.1
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 3.2e-27 127.9 103 61.2
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 7.1e-27 126.7 125 53.6
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-26 125.9 118 52.5
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.1e-26 125.2 101 63.4
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 7.8e-26 123.2 143 43.4
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.3e-25 122.5 106 57.5
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 7.3e-24 116.7 70 72.9
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-23 115.9 90 62.2
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-23 115.9 90 62.2
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-23 115.9 90 62.2
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-22 111.3 86 61.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 3.4e-21 107.8 72 63.9
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 3.2e-19 101.3 88 62.5
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.2e-19 101.3 80 62.5
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 7.1e-19 100.1 184 44.6
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 9.2e-19 99.8 80 61.2
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-18 99.0 59 78.0
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 3.5e-18 97.8 105 50.5
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-17 94.4 59 74.6
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-16 92.0 70 64.3
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.6e-15 89.0 84 52.4
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 2.1e-15 88.6 56 71.4
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 3.6e-15 87.8 84 51.2
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.4e-14 85.9 65 60.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 3.1e-14 84.7 94 46.8
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 6.8e-14 83.6 96 39.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-13 80.5 126 38.9
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 9.9e-13 79.7 57 70.2
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-12 78.6 55 61.8
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-12 78.2 63 65.1
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-11 75.1 49 73.5
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 1.6e-10 72.4 96 52.1
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 2.1e-10 72.0 76 50.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.5e-10 71.2 113 43.4
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 7.8e-10 70.1 197 36.0
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-09 68.2 207 33.8
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.1e-08 66.2 65 47.7
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-08 65.1 71 56.3
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 3.3e-08 64.7 75 45.3
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 1.6e-07 62.4 44 63.6
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-07 62.4 172 34.3
Thecc.05G138200 Theobroma cacao HOM05D002722 ORTHO05D003076 8.1e-07 60.1 63 60.3
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 6.9e-06 57.0 51 54.9
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 6.9e-06 57.0 51 54.9
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 6.9e-06 57.0 39 61.5


User provided reference genes

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