Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 0.0e+00 1486.5 1385 100.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 5.5e-193 679.5 1387 49.1
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 6.3e-189 666.0 1387 53.5
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.7e-184 650.6 1388 51.7
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 8.8e-183 645.6 1364 53.8
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.2e-177 627.1 1386 54.7
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1385 52.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 3.3e-174 617.1 1385 55.7
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.7e-168 597.4 1384 49.2
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 9.5e-161 572.4 1388 48.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-160 572.0 1388 48.6
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.5e-158 565.1 1389 49.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-156 558.9 1385 52.9
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.4e-156 556.6 1388 51.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.7e-155 552.7 1391 53.7
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 3.0e-151 540.8 1407 45.8
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 9.2e-148 529.3 1417 51.2
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.9e-146 523.9 1115 43.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.9e-140 505.0 1404 51.4
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-138 498.4 1386 51.4
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 3.9e-138 497.3 1391 51.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 4.3e-137 493.8 1386 50.9
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.2e-136 492.3 1336 51.9
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-134 485.7 1387 44.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.9e-133 481.1 1386 50.2
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.7e-133 480.7 1336 48.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.7e-133 480.7 1387 42.7
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.4e-132 476.9 1538 35.4
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.3e-130 471.5 1386 42.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 8.9e-127 459.5 1386 44.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 6.4e-125 453.4 1390 46.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.1e-124 452.6 1579 45.1
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.1e-124 452.6 1389 46.2
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.9e-124 451.8 1445 41.2
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 2.4e-124 451.4 1335 46.1
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 3.2e-124 451.1 1525 41.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.0e-122 446.0 1310 41.0
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.6e-122 443.4 1387 47.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 8.6e-122 443.0 1387 47.3
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.9e-121 441.8 1391 42.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.0e-119 434.1 1519 38.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-117 427.9 1404 49.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-117 427.9 1404 49.1
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 7.8e-115 419.9 1391 44.5
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-114 418.7 1388 49.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 6.6e-114 416.8 1334 45.3
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 8.7e-114 416.4 1389 48.7
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.1e-113 416.0 1386 39.5
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.6e-112 411.0 1389 48.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.2e-110 406.0 1335 41.5
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 9.9e-110 402.9 1540 35.2
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.4e-108 398.3 269 96.7
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.5e-105 388.3 1393 40.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.5e-105 388.3 1195 38.8
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.3e-105 387.9 1387 46.6
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 2.8e-104 384.8 1499 32.8
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.7e-104 384.4 1389 46.6
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 3.1e-103 381.3 1582 38.4
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.3e-101 375.9 1386 45.0
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.2e-101 375.2 1388 46.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.8e-101 374.4 1339 40.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.7e-99 368.2 1385 38.0
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-98 365.9 1387 39.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 8.7e-98 363.2 1569 39.5
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.3e-97 360.9 1387 41.6
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.6e-97 360.5 1389 38.3
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.1e-96 358.6 1386 39.2
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.5e-91 341.3 1389 41.8
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 8.2e-88 330.1 624 46.0
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.5e-86 324.3 1389 43.9
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.8e-85 321.2 1345 38.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.9e-84 318.9 1581 37.1
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 5.5e-84 317.4 1387 35.6
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 9.3e-84 316.6 1526 37.4
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.6e-83 315.8 1389 36.7
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.6e-83 314.7 627 40.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 9.7e-81 306.6 756 34.8
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.9e-78 297.4 1449 31.2
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.1e-76 293.1 1463 39.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.0e-73 282.3 1386 42.9
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 9.7e-73 280.0 576 45.1
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-71 276.6 1507 34.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.4e-71 276.2 1398 40.2
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.4e-70 271.6 1399 40.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.7e-69 269.2 1386 39.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 4.2e-68 264.6 1387 39.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 4.2e-68 264.6 669 31.8
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 5.5e-60 237.7 1355 35.9
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-54 219.9 298 48.0
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.5e-52 212.2 1386 32.9
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 7.2e-52 210.7 289 46.7
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 8.8e-50 203.8 646 36.4
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 4.4e-49 201.4 341 46.0
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.0e-45 190.3 1306 32.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.3e-45 189.9 1339 35.9
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 8.6e-45 187.2 542 41.9
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.1e-43 182.6 234 53.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.7e-40 172.9 356 37.6
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.7e-40 172.9 353 36.5
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.9e-40 171.4 534 35.0
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.3e-37 163.3 380 34.5
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.5e-36 159.1 605 28.4
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.3e-36 157.5 346 40.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.1e-35 156.0 433 37.0
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 4.7e-35 154.8 175 50.3
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.0e-34 152.1 209 46.9
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 5.2e-34 151.4 253 43.5
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.0e-33 149.4 1437 36.0
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 2.9e-32 145.6 1389 34.9
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.4e-31 141.4 305 43.6
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.0e-30 139.4 521 41.5
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.9e-29 135.2 1324 42.9
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.2e-27 130.2 303 43.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.6e-27 129.8 230 43.0
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 6.2e-27 127.9 321 41.7
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.8e-26 126.3 391 38.4
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 6.8e-26 124.4 163 47.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.2e-25 123.6 676 28.3
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.4e-25 121.7 306 42.2
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.4e-25 121.7 363 32.5
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 7.5e-25 120.9 229 41.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-23 116.3 343 31.8
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.4e-23 115.9 281 35.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 2.7e-22 112.5 353 36.8
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 2.7e-22 112.5 353 36.8
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.7e-21 109.8 626 41.9
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 6.6e-21 107.8 354 37.0
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.6e-19 103.2 1239 28.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 4.7e-19 101.7 128 47.7
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.8e-18 99.8 203 35.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 8.9e-18 97.4 1327 43.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.4e-17 95.1 145 44.8
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 5.8e-17 94.7 1508 41.8
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 5.8e-17 94.7 297 30.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.5e-17 94.4 182 37.9
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.5e-17 94.4 181 38.1
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 9.9e-17 94.0 125 47.2
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.9e-16 92.4 1507 40.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 8.3e-16 90.9 1487 42.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 8.3e-16 90.9 1441 30.3
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.1e-15 90.5 248 32.7
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.4e-15 89.4 221 32.1
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 4.1e-15 88.6 180 34.4
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.4e-15 88.2 221 31.7
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.5e-14 85.5 137 43.1
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.0e-14 84.7 205 39.0
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 7.8e-14 84.3 1389 38.0
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.7e-13 83.2 352 27.6
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-13 82.8 506 26.3
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 6.6e-13 81.3 199 37.7
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.9e-12 79.7 116 43.1
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 9.5e-12 77.4 171 38.6
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.2e-11 77.0 161 34.2
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-11 77.0 133 41.4
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 3.6e-11 75.5 100 47.0
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.0e-10 72.0 192 30.2
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.0e-10 72.0 192 30.2
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 3.4e-09 68.9 141 32.6
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 3.4e-09 68.9 141 32.6
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 2.2e-08 66.2 106 46.2
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.9e-08 65.9 120 40.8
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 3.2e-07 62.4 124 37.1
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.1e-07 62.0 389 25.4
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.1e-07 61.2 180 30.6
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 9.2e-07 60.8 189 30.2
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 1.2e-06 60.5 110 38.2


User provided reference genes

Program Settings