Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1912.9 1030 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1302.3 1017 68.8
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1272.7 1014 69.3
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1272.3 1016 67.7
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1231.9 1019 66.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1225.7 1012 66.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1214.1 1023 64.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1210.3 1027 65.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1208.7 1011 66.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1208.7 1014 66.6
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1206.0 1017 66.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1201.8 1020 64.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1201.8 1017 65.9
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1199.5 1025 64.0
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1192.9 1023 64.4
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1192.6 1027 64.4
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1191.0 1034 63.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1187.6 1024 64.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1184.9 1040 64.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1184.5 1020 62.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1184.5 1022 65.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1183.7 1019 63.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1183.3 1020 62.5
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1181.4 1027 63.9
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1178.7 1025 65.2
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1177.2 1024 64.6
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1176.8 1030 64.0
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1169.1 1020 64.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1166.0 1034 64.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1166.0 1021 62.4
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1164.1 1032 64.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1162.9 1024 63.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1160.2 1021 62.6
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1154.8 1016 62.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1152.9 1018 61.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1146.7 1011 65.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1144.8 1015 62.4
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1144.0 1022 62.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1137.5 1019 62.2
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1130.5 1024 61.5
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1122.5 1036 61.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1120.5 1023 62.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1094.3 1026 59.7
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1093.2 1025 60.0
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1082.8 974 60.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1076.2 1023 59.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1075.8 1022 59.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1075.8 1018 59.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1075.5 1017 59.1
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1075.5 1032 59.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1075.1 1039 58.9
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 7.0e-312 1074.3 1035 58.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.9e-309 1064.3 1034 58.5
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 6.5e-308 1060.8 1023 58.1
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 4.2e-307 1058.1 1030 58.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 6.1e-306 1054.3 1030 58.4
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.8e-305 1052.7 1023 57.6
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 6.3e-303 1044.3 1040 57.6
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 8.2e-303 1043.9 1007 59.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.8e-302 1042.7 1024 58.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 5.3e-302 1041.2 975 60.0
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 3.5e-301 1038.5 973 59.8
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.5e-299 1033.1 1042 57.4
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 1.5e-299 1033.1 975 59.2
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 5.5e-299 1031.2 1037 57.2
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-298 1030.0 1037 57.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 3.6e-298 1028.5 998 59.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.4e-297 1026.5 1038 57.1
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.8e-297 1026.2 1026 58.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 1.2e-296 1023.5 982 58.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 5.5e-291 1004.6 1029 58.5
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-290 1003.4 1055 56.3
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 4.0e-289 998.4 1040 54.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.5e-288 996.5 1068 54.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 9.2e-286 987.3 1040 55.5
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 4.5e-285 984.9 1006 56.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 2.9e-284 982.2 1168 51.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 2.1e-282 976.1 984 56.3
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 3.6e-282 975.3 983 56.5
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.8e-278 963.0 1029 54.1
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 2.4e-278 962.6 983 56.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 9.2e-278 960.7 990 55.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 7.8e-277 957.6 985 55.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 3.6e-274 948.7 989 55.2
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 3.0e-268 929.1 969 55.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.5e-267 926.0 1014 53.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 4.7e-266 921.8 981 54.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.3e-265 919.5 821 60.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.9e-263 911.8 914 59.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 8.3e-263 911.0 823 60.4
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.9e-262 909.8 933 56.3
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 2.7e-261 906.0 981 53.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.6e-258 895.6 1022 52.4
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.1e-249 867.5 1034 51.4
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.1e-249 867.5 976 52.4
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 6.0e-245 851.7 998 50.5
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 4.9e-239 832.0 826 55.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 7.4e-235 818.1 1279 43.7
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.2e-231 806.6 820 57.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.9e-227 793.5 921 50.3
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.1e-226 790.0 1021 48.9
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 2.1e-226 790.0 996 49.1
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.1e-221 773.5 903 52.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-214 751.1 806 54.3
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.2e-213 747.7 984 47.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 7.4e-195 685.3 648 60.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 8.2e-194 681.8 993 45.5
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.9e-192 675.6 898 49.2
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.0e-168 597.4 428 74.3
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.5e-168 596.7 440 72.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.2e-153 545.4 1017 34.8
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.3e-150 537.0 949 37.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 5.6e-150 536.2 1020 35.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.2e-149 535.0 990 36.7
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.2e-148 529.6 1011 35.7
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 8.3e-146 522.3 509 56.2
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.1e-140 503.8 897 34.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 5.8e-139 499.6 405 65.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.5e-118 431.0 409 59.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 5.8e-115 419.9 506 49.2
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.7e-109 400.6 398 56.0
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.7e-109 400.6 346 61.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.9e-106 390.2 667 39.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.1e-97 362.5 821 32.5
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.0e-95 355.9 401 50.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.4e-95 355.5 382 54.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.2e-81 307.8 312 56.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.0e-79 302.8 230 70.9
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 2.6e-75 288.1 396 44.2
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 4.2e-73 280.8 403 44.2
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-66 258.5 193 68.9
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.2e-44 184.9 542 29.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 4.6e-43 181.0 139 71.9
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-40 172.9 175 60.6
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-40 172.9 175 60.6
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 8.0e-40 170.2 86 95.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 8.9e-39 166.8 936 22.4
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 7.8e-35 153.7 155 61.3
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.7e-34 152.5 191 49.7
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 8.6e-34 150.2 816 21.6
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.1e-33 149.8 101 76.2
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.5e-33 149.4 148 61.5
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.5e-33 148.7 139 61.2
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 7.3e-33 147.1 99 70.7
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.4e-30 138.3 165 47.9
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.0e-26 126.7 63 88.9
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.1e-24 119.0 340 26.5
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.4e-22 111.7 63 76.2
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 2.9e-21 108.6 85 63.5
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.4e-21 107.5 105 53.3
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.4e-20 105.5 120 52.5
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 5.4e-20 104.4 95 55.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 5.1e-18 97.8 123 48.0
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.3e-16 93.2 125 50.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.8e-16 92.0 96 61.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.4e-15 89.7 59 62.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.8e-13 81.6 41 82.9
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 9.3e-12 77.0 65 55.4
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.2e-11 76.6 46 84.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.8e-08 64.7 43 72.1
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.5e-06 58.2 45 62.2


User provided reference genes

Program Settings