Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.0e-75 286.6 138 100.0
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 2.0e-66 255.8 138 87.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 4.3e-66 254.6 138 85.5
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 5.7e-66 254.2 138 85.5
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 7.4e-66 253.8 138 85.5
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 9.7e-66 253.4 138 84.1
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 9.7e-66 253.4 138 84.8
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 9.7e-66 253.4 138 84.8
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.7e-65 252.7 138 85.5
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.7e-65 252.7 138 85.5
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.7e-65 252.7 138 82.6
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.7e-65 252.7 137 83.9
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 2.8e-65 251.9 138 86.2
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 2.8e-65 251.9 138 82.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.7e-65 251.5 136 83.8
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 8.2e-65 250.4 138 84.1
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 8.2e-65 250.4 137 81.8
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.4e-64 249.6 136 84.6
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.4e-64 249.6 133 86.5
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 3.1e-64 248.4 138 81.9
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 3.1e-64 248.4 138 82.6
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 3.1e-64 248.4 138 83.3
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 4.1e-64 248.1 138 85.5
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.1e-64 248.1 138 85.5
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.1e-64 248.1 138 85.5
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 4.1e-64 248.1 133 85.7
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 5.3e-64 247.7 133 85.7
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 5.3e-64 247.7 133 85.7
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 5.3e-64 247.7 136 83.8
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 6.9e-64 247.3 137 81.0
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 6.9e-64 247.3 137 80.3
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 9.1e-64 246.9 135 83.7
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 9.1e-64 246.9 137 81.0
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.2e-63 246.5 137 81.0
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.5e-63 246.1 138 84.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 1.5e-63 246.1 138 80.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 2.6e-63 245.4 137 80.3
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.6e-63 245.4 137 81.0
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 4.5e-63 244.6 138 81.2
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 4.5e-63 244.6 138 82.6
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 4.5e-63 244.6 138 80.4
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 5.9e-63 244.2 134 83.6
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.3e-62 243.0 137 80.3
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 2.9e-62 241.9 137 78.1
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.8e-62 241.5 138 79.0
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 3.8e-62 241.5 138 79.7
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.1e-61 240.0 138 79.0
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.1e-61 240.0 133 82.0
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.4e-61 239.6 138 81.2
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.9e-61 239.2 138 79.0
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.9e-61 239.2 138 77.5
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 2.5e-61 238.8 138 81.2
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 4.2e-61 238.0 132 83.3
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.6e-60 236.1 137 78.1
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.6e-60 236.1 137 78.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.7e-60 235.3 132 81.1
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.7e-60 235.3 133 80.5
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 4.7e-60 234.6 138 80.4
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 7.9e-60 233.8 132 81.1
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.3e-59 232.3 136 77.9
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 6.7e-59 230.7 138 77.5
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-58 229.9 131 77.1
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.1e-58 229.9 131 77.1
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.3e-58 228.4 131 77.1
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 7.4e-58 227.3 131 76.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 7.4e-58 227.3 131 76.3
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 9.7e-58 226.9 138 73.2
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.3e-57 226.5 131 76.3
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 2.2e-57 225.7 132 80.3
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.0e-55 219.2 133 72.9
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 4.5e-55 218.0 136 73.5
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 4.5e-55 218.0 135 74.1
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.5e-55 218.0 132 73.5
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 6.5e-54 214.2 136 69.9
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 6.5e-54 214.2 130 73.8
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 8.5e-54 213.8 134 70.9
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 9.4e-53 210.3 135 71.1
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 2.1e-52 209.1 117 84.6
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.7e-49 199.5 117 81.2
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.1e-48 196.8 117 78.6
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.8e-48 196.1 117 78.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.1e-48 195.3 117 77.8
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 2.6e-47 192.2 117 76.9
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 2.6e-47 192.2 116 75.9
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 5.9e-47 191.0 117 76.1
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.3e-46 189.9 117 76.1
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 2.9e-46 188.7 117 76.9
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 5.0e-46 188.0 117 74.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.2e-44 183.3 134 61.2
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.2e-44 183.3 134 61.2
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.6e-44 183.0 134 61.2
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.7e-44 182.2 117 76.9
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.4e-43 179.9 134 59.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 3.4e-42 175.3 136 56.6
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.7e-39 165.6 148 56.1
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.0e-38 161.4 87 79.3
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 4.7e-36 154.8 88 81.8
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.0e-35 152.1 88 81.8
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.0e-35 152.1 88 81.8
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 7.5e-34 147.5 88 80.7
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.7e-33 146.4 96 75.0
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 1.1e-32 143.7 88 79.5
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.8e-30 135.2 85 72.9
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 2.3e-27 125.9 85 67.1
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.5e-26 120.9 70 74.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 6.4e-17 91.3 131 38.2
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 7.3e-13 77.8 42 90.5
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 2.6e-10 69.3 41 78.0
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 3.4e-10 68.9 98 37.8
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 7.5e-10 67.8 41 82.9
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.4e-08 62.8 39 74.4
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.2e-07 60.5 148 29.1


User provided reference genes

Program Settings