Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.7e-239 830.1 425 100.0
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.1e-196 689.1 425 81.4
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.6e-194 682.2 423 82.0
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 7.6e-194 680.6 424 81.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.9e-193 678.7 421 81.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.9e-193 678.7 425 80.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.9e-193 678.7 422 79.6
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.4e-192 676.4 425 80.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.1e-192 674.9 425 80.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.4e-192 674.5 425 80.2
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 7.1e-192 674.1 425 79.8
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 7.1e-192 674.1 425 79.3
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.7e-191 672.2 425 80.0
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.0e-191 671.0 425 79.8
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.0e-190 670.2 425 79.5
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.3e-190 669.1 425 79.1
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.9e-190 668.3 425 79.1
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.1e-189 666.8 425 80.0
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.5e-189 665.6 425 80.0
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 6.2e-188 661.0 425 79.3
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.1e-187 660.2 425 77.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.4e-187 659.8 425 78.4
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 2.4e-187 659.1 425 78.1
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.4e-187 659.1 425 78.4
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.4e-187 659.1 425 78.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.1e-187 658.7 425 78.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.2e-187 657.9 425 77.2
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.9e-186 653.7 422 77.0
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.3e-185 653.3 422 77.3
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.8e-185 651.7 426 77.9
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 6.4e-185 651.0 425 77.2
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.9e-184 649.4 425 76.7
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.2e-184 648.7 425 76.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.2e-184 648.3 425 76.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 4.2e-184 648.3 425 77.2
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.2e-183 646.7 425 76.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.1e-183 646.0 425 76.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.1e-182 641.3 422 76.3
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 8.7e-182 640.6 425 77.4
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.5e-181 639.8 422 76.1
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.9e-181 639.4 427 76.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 2.5e-181 639.0 426 77.0
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.3e-181 638.6 426 76.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.3e-181 638.6 425 76.7
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 5.6e-181 637.9 423 76.1
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.3e-180 636.7 422 75.8
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-180 636.7 432 74.1
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.6e-180 635.2 425 74.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.8e-180 634.8 425 74.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.1e-179 633.6 427 76.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 3.1e-179 632.1 459 73.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.1e-179 632.1 425 74.8
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 3.4e-178 628.6 423 75.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 4.5e-178 628.2 426 74.9
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 7.6e-178 627.5 434 75.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.2e-177 625.9 428 75.5
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 8.4e-177 624.0 425 75.1
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.1e-176 623.6 427 74.7
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.2e-176 622.1 425 74.1
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.7e-175 619.0 427 73.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 7.9e-175 617.5 422 76.1
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.9e-175 617.5 425 73.6
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.3e-174 616.7 426 72.1
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.3e-173 612.1 464 69.2
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 2.8e-172 609.0 425 74.1
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 6.2e-172 607.8 427 72.4
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.4e-171 605.9 458 70.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.1e-171 605.5 402 75.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.1e-171 605.5 425 70.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.2e-170 603.6 423 72.6
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 2.0e-170 602.8 423 72.6
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.6e-170 602.4 423 72.1
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.4e-170 602.1 429 70.6
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 4.2e-168 595.1 424 69.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.0e-167 591.3 425 69.6
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-165 587.0 427 71.0
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 9.6e-165 583.9 433 70.2
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.3e-164 583.6 425 68.9
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-163 579.7 425 69.2
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.1e-163 578.9 425 69.2
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.0e-162 576.2 425 70.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.6e-162 575.9 422 66.4
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.0e-161 573.9 426 70.0
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 7.1e-160 567.8 423 68.8
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.5e-159 565.5 423 70.4
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.0e-159 564.7 426 68.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.0e-158 563.9 425 69.4
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.8e-158 563.1 426 68.1
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 3.0e-158 562.4 427 67.7
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.0e-158 562.4 426 67.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 3.9e-158 562.0 422 65.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.5e-157 559.3 427 67.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 3.3e-157 558.9 426 67.4
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.7e-156 555.4 425 68.9
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 6.3e-156 554.7 383 76.0
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.8e-155 553.1 426 66.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.4e-155 552.7 425 66.8
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 6.9e-155 551.2 425 69.4
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.3e-153 547.0 422 65.2
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.5e-152 542.7 425 67.5
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.2e-152 542.3 426 66.2
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 4.2e-152 542.0 426 66.4
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 4.6e-151 538.5 426 66.0
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-150 536.6 426 65.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.8e-150 536.6 426 66.0
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 6.7e-150 534.6 426 65.7
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.5e-149 533.5 426 64.8
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.7e-149 531.6 425 64.2
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.7e-149 531.6 425 64.2
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.3e-148 530.4 324 81.2
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-148 529.6 425 64.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.2e-148 529.6 425 63.8
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.8e-148 529.3 425 64.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 8.2e-148 527.7 436 65.6
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 7.7e-146 521.2 426 65.0
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.2e-145 519.6 425 62.1
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.6e-143 513.5 313 82.4
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.7e-142 508.1 426 62.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 9.7e-141 504.2 388 67.5
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.5e-138 496.9 360 68.1
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.0e-138 496.5 444 59.7
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 5.9e-130 468.4 427 56.2
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 3.2e-128 462.6 424 55.4
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 9.4e-128 461.1 427 54.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.2e-122 444.1 388 64.4
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.5e-120 436.4 451 51.2
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 5.2e-118 428.7 400 59.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.1e-111 406.8 284 69.7
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.3e-110 403.3 241 83.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.6e-109 399.8 430 50.0
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.9e-108 395.6 239 83.7
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-104 384.4 427 55.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.7e-98 363.2 355 57.5
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 6.0e-98 362.1 336 57.4
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-95 354.0 356 56.5
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.7e-73 278.5 214 67.3
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-66 258.1 325 47.7
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.2e-66 258.1 431 37.6
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 8.1e-63 245.4 350 39.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 4.2e-59 233.0 370 43.8
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.2e-58 231.5 190 65.8
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-55 220.3 195 60.0
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-51 208.4 305 44.6
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.9e-49 199.9 195 54.9
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.7e-44 184.5 254 45.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.8e-41 174.5 137 62.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 8.2e-39 165.6 332 33.1
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 4.8e-31 139.8 153 51.6
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.2e-28 131.0 105 65.7
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.2e-27 126.7 119 55.5
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-23 114.8 78 70.5
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-23 114.8 78 70.5
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 3.7e-23 113.6 125 50.4
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 9.1e-22 109.0 76 69.7
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.0e-12 79.0 120 43.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.2e-12 77.8 74 55.4
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 6.5e-12 76.3 61 68.9
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 3.2e-11 73.9 53 77.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.2e-11 73.6 62 54.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.8e-09 66.2 48 62.5
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 1.5e-08 65.1 48 62.5
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.5e-08 62.8 36 80.6
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 1.3e-07 62.0 194 29.9
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.7e-07 61.6 194 29.9
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.2e-07 61.2 194 29.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-07 61.2 49 63.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.2e-07 61.2 49 63.3
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 4.8e-07 60.1 203 30.0
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 4.8e-07 60.1 203 30.0
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.8e-07 60.1 194 29.4
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 6.3e-07 59.7 202 27.7
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 6.3e-07 59.7 202 27.7
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 6.3e-07 59.7 202 27.7
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 8.3e-07 59.3 193 26.9
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 1.4e-06 58.5 37 67.6
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 1.4e-06 58.5 193 26.9
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.4e-06 58.5 193 26.9
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.4e-06 58.5 193 26.9
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.8e-06 58.2 193 26.9
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.8e-06 58.2 202 26.7
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 2.4e-06 57.8 193 26.9
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 2.4e-06 57.8 193 26.9
Sabra02G0014100 Salix brachista HOM05D002716 ORTHO05D003324 4.1e-06 57.0 211 25.6
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 9.1e-06 55.8 193 25.9
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 9.1e-06 55.8 193 25.9
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 9.1e-06 55.8 193 25.9


User provided reference genes

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