Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 2.6e-103 379.4 310 100.0
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 2.6e-103 379.4 310 100.0
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 2.3e-43 180.3 295 69.2
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 8.9e-43 178.3 295 68.8
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 2.6e-42 176.8 299 65.6
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 7.5e-42 175.3 311 67.5
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 1.3e-41 174.5 174 58.6
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 8.3e-41 171.8 265 70.2
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 2.4e-40 170.2 302 64.2
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.4e-40 170.2 169 57.4
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 1.7e-38 164.1 300 62.7
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 3.0e-38 163.3 262 65.3
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 3.9e-38 162.9 289 63.3
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 3.9e-38 162.9 298 65.8
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 2.5e-37 160.2 285 59.6
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 3.3e-37 159.8 313 57.2
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 4.3e-37 159.5 232 75.0
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 6.2e-36 155.6 285 58.2
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 8.9e-35 151.8 317 63.4
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 2.6e-34 150.2 301 65.1
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 3.4e-34 149.8 125 63.2
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 5.8e-34 149.1 278 60.1
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 5.8e-34 149.1 319 54.5
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 5.8e-34 149.1 165 52.7
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 7.5e-34 148.7 274 57.7
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 7.5e-34 148.7 278 63.3
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 9.9e-34 148.3 270 59.6
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 9.9e-34 148.3 284 57.0
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 3.7e-33 146.4 247 74.9
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 4.9e-33 146.0 232 72.8
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 1.9e-32 144.1 183 49.2
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 2.4e-32 143.7 269 62.8
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 2.4e-32 143.7 269 62.8
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 3.2e-32 143.3 314 62.4
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 4.1e-32 142.9 278 58.6
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 5.4e-32 142.5 288 60.8
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 1.2e-31 141.4 269 69.9
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 2.7e-31 140.2 271 62.4
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 3.5e-31 139.8 271 59.0
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 7.8e-31 138.7 272 59.9
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.0e-30 138.3 310 66.5
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 2.3e-30 137.1 278 59.0
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 3.0e-30 136.7 274 66.1
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 3.0e-30 136.7 312 57.7
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 3.9e-30 136.3 306 63.7
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 3.9e-30 136.3 170 55.3
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 3.9e-30 136.3 170 55.3
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 3.9e-30 136.3 170 55.3
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 6.6e-30 135.6 254 67.7
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 6.6e-30 135.6 313 55.9
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.1e-29 134.8 274 59.9
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 1.5e-29 134.4 271 58.3
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 1.9e-29 134.0 265 44.2
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 2.5e-29 133.7 322 53.1
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 3.3e-29 133.3 295 59.0
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 4.3e-29 132.9 134 61.9
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 4.3e-29 132.9 300 65.7
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 5.6e-29 132.5 264 64.8
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 5.6e-29 132.5 303 59.4
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 5.6e-29 132.5 301 37.9
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.6e-28 131.0 322 60.2
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 1.6e-28 131.0 252 75.0
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 2.1e-28 130.6 279 68.1
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 3.6e-28 129.8 299 60.5
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 6.2e-28 129.0 273 54.9
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 1.1e-27 128.3 264 64.8
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.1e-27 128.3 266 63.9
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.1e-27 128.3 292 64.4
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.4e-27 127.9 286 60.5
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 2.4e-27 127.1 252 74.6
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.1e-27 126.7 167 46.1
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 4.0e-27 126.3 300 64.3
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 5.2e-27 125.9 313 60.4
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 6.8e-27 125.6 302 63.6
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 8.9e-27 125.2 266 64.3
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 1.2e-26 124.8 140 54.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 2.0e-26 124.0 305 61.0
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.0e-26 124.0 261 65.5
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 5.8e-26 122.5 254 72.4
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 9.9e-26 121.7 179 49.7
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.1e-24 118.2 296 57.1
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.4e-24 117.9 285 57.2
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 9.2e-24 115.2 273 59.3
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 2.7e-23 113.6 277 57.8
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.0e-22 111.7 292 52.4
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 1.3e-22 111.3 126 56.3
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 2.3e-22 110.5 102 57.8
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 5.1e-22 109.4 178 43.8
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 5.1e-22 109.4 303 63.0
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 8.7e-22 108.6 249 69.9
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 1.1e-21 108.2 156 46.8
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.1e-21 108.2 143 51.7
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 2.5e-21 107.1 214 68.7
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 3.3e-21 106.7 262 61.8
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.2e-20 104.8 192 76.0
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 3.6e-20 103.2 252 64.7
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 8.1e-20 102.1 250 65.2
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 4.0e-19 99.8 250 57.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 5.2e-19 99.4 66 74.2
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 8.4e-17 92.0 289 54.7
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 6.2e-12 75.9 97 43.3
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 3.2e-08 63.5 57 49.1
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 5.4e-08 62.8 62 50.0
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 5.4e-08 62.8 62 50.0
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 7.1e-08 62.4 62 51.6
Ah.04g155230 Amaranthus hybridus HOM05D007469 ORTHO05D026517 1.2e-07 61.6 37 73.0
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 1.2e-07 61.6 85 38.8
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 1.6e-07 61.2 57 49.1
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.6e-07 61.2 75 42.7
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 2.1e-07 60.8 57 49.1
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 2.1e-07 60.8 57 50.9
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 2.7e-07 60.5 57 47.4
Actinidia28462 Actinidia chinensis HOM05D007469 ORTHO05D003360 3.5e-07 60.1 56 55.4
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.5e-07 60.1 57 47.4
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 3.5e-07 60.1 57 50.9
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 4.6e-07 59.7 72 43.1
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 4.6e-07 59.7 57 47.4
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 4.6e-07 59.7 82 40.2
Pp3c20_7810 Physcomitrium patens HOM05D005999 ORTHO05D003360 4.6e-07 59.7 50 58.0
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 6.0e-07 59.3 57 47.4
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 7.9e-07 58.9 57 49.1
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 7.9e-07 58.9 57 49.1
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 7.9e-07 58.9 62 46.8
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 1.3e-06 58.2 62 46.8
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 1.3e-06 58.2 57 45.6
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 1.3e-06 58.2 57 47.4
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 1.3e-06 58.2 71 42.3
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 1.8e-06 57.8 57 45.6
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 1.8e-06 57.8 57 45.6
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 1.8e-06 57.8 37 70.3
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 1.8e-06 57.8 88 37.5
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 2.3e-06 57.4 62 45.2
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 2.3e-06 57.4 74 39.2
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 2.3e-06 57.4 57 47.4
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 3.0e-06 57.0 62 46.8
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 3.0e-06 57.0 74 43.2
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 3.9e-06 56.6 64 46.9
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 3.9e-06 56.6 74 40.5
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 5.1e-06 56.2 62 43.5
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 5.1e-06 56.2 62 46.8
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 5.1e-06 56.2 74 41.9
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 5.1e-06 56.2 65 43.1
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 6.7e-06 55.8 63 46.0
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 6.7e-06 55.8 62 46.8
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 6.7e-06 55.8 67 41.8
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 6.7e-06 55.8 57 45.6
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 6.7e-06 55.8 57 45.6
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 6.7e-06 55.8 57 40.4
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 6.7e-06 55.8 74 41.9
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 6.7e-06 55.8 74 43.2
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 8.7e-06 55.5 70 44.3
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 8.7e-06 55.5 65 43.1


User provided reference genes

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