Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-254 882.1 441 100.0
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.2e-207 726.5 431 83.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.3e-188 663.3 419 77.3
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.9e-188 662.1 420 78.3
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 3.2e-187 658.7 421 78.1
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.6e-186 656.4 426 76.5
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.5e-186 655.2 430 75.8
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 6.0e-186 654.4 418 76.8
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 7.9e-186 654.1 435 72.9
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.8e-185 652.9 439 74.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 2.3e-185 652.5 418 77.0
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.1e-185 651.4 418 77.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.7e-185 651.0 436 72.5
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 6.7e-185 651.0 420 76.9
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 8.7e-185 650.6 429 74.6
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.1e-184 650.2 424 74.8
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.5e-184 649.0 434 75.1
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 2.5e-184 649.0 425 76.0
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.3e-184 648.7 440 72.3
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 4.3e-184 648.3 418 76.8
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 4.3e-184 648.3 418 76.8
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.3e-184 648.3 418 76.8
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 5.6e-184 647.9 440 72.3
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 7.4e-184 647.5 440 72.5
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 9.6e-184 647.1 439 74.5
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 9.6e-184 647.1 432 73.1
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.3e-183 646.7 416 77.9
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.6e-183 646.4 420 76.2
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.6e-183 646.4 412 76.5
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 2.1e-183 646.0 438 72.4
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 2.1e-183 646.0 436 74.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.8e-183 645.6 420 76.4
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 3.7e-183 645.2 441 73.7
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.7e-183 645.2 420 76.2
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 3.7e-183 645.2 430 75.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.8e-182 642.9 425 74.1
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 3.1e-182 642.1 430 74.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 3.1e-182 642.1 418 76.1
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 5.3e-182 641.3 430 74.7
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 5.3e-182 641.3 420 75.7
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 6.9e-182 641.0 427 74.2
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.5e-181 639.8 428 72.2
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.0e-181 639.4 431 74.2
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 2.6e-181 639.0 427 74.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 4.5e-181 638.3 421 74.3
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.5e-181 638.3 423 74.9
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 5.8e-181 637.9 428 73.1
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 9.9e-181 637.1 423 74.9
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 9.9e-181 637.1 418 75.1
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 9.9e-181 637.1 425 74.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.7e-180 636.3 421 74.8
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.7e-180 636.3 432 72.2
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.7e-180 636.3 426 74.9
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.2e-180 636.0 434 72.1
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 2.9e-180 635.6 421 74.8
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 2.9e-180 635.6 421 74.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.9e-180 634.8 425 74.1
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.9e-180 634.8 434 72.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 6.4e-180 634.4 437 71.6
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 8.4e-180 634.0 418 75.1
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 8.4e-180 634.0 419 74.5
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 2.5e-179 632.5 439 71.5
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.2e-179 631.7 421 74.1
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 4.2e-179 631.7 420 74.0
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 4.2e-179 631.7 419 74.5
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 5.5e-179 631.3 426 73.2
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 7.1e-179 630.9 431 73.1
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.1e-179 630.9 436 72.2
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 9.3e-179 630.6 439 71.3
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 9.3e-179 630.6 436 72.2
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.3e-179 630.6 425 73.4
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.2e-178 630.2 424 72.9
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.2e-178 630.2 443 70.7
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 2.7e-178 629.0 434 71.2
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.7e-178 629.0 422 73.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.5e-178 628.6 440 71.6
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 4.6e-178 628.2 439 72.2
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 4.6e-178 628.2 435 72.6
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 7.9e-178 627.5 440 72.0
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.9e-178 627.5 424 73.6
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.0e-177 627.1 436 71.8
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.8e-177 626.3 427 71.9
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 3.9e-177 625.2 431 72.4
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.9e-177 625.2 433 71.4
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 6.7e-177 624.4 431 71.2
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 6.7e-177 624.4 431 71.5
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 2.5e-176 622.5 428 72.9
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 2.5e-176 622.5 425 72.7
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.6e-175 619.8 421 72.7
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.1e-175 619.4 414 74.4
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 8.2e-175 617.5 436 70.4
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 4.0e-174 615.1 432 71.3
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 5.3e-174 614.8 424 71.2
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.5e-173 613.2 423 72.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 2.7e-170 602.4 433 71.1
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 1.0e-169 600.5 425 71.1
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 5.1e-169 598.2 407 71.5
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 5.1e-169 598.2 419 68.3
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 5.7e-168 594.7 426 70.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.8e-167 591.7 436 67.4
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.2e-165 587.0 420 71.2
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 7.7e-165 584.3 420 70.2
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.0e-164 583.9 392 74.2
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.8e-161 570.9 417 68.6
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 7.4e-160 567.8 422 65.2
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.2e-159 566.2 394 71.8
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.1e-158 563.9 413 67.3
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.2e-155 552.4 386 73.1
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 5.5e-155 551.6 378 72.8
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.6e-154 550.1 421 65.8
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 6.1e-154 548.1 373 73.2
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 2.3e-153 546.2 412 65.8
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.1e-152 543.9 373 72.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 5.7e-152 541.6 420 62.9
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 2.8e-151 539.3 395 68.1
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 1.1e-150 537.3 415 64.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.6e-149 532.7 429 61.3
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 4.5e-149 531.9 421 63.2
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.7e-148 530.0 421 66.5
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.5e-148 527.7 420 62.9
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.9e-147 526.6 419 64.2
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 7.2e-147 524.6 419 62.8
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.7e-146 522.7 420 66.7
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.4e-145 520.4 419 63.5
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-145 520.0 420 61.9
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.6e-144 516.2 422 61.6
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.5e-139 499.6 427 62.1
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.7e-138 496.1 419 60.9
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.0e-133 479.9 424 59.4
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 4.2e-131 472.2 427 58.3
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 5.5e-131 471.9 331 72.5
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.0e-129 467.6 367 64.0
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.4e-128 462.6 438 57.1
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.3e-127 460.7 451 55.2
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.4e-126 457.2 345 68.7
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 4.1e-126 455.7 453 53.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.0e-125 453.4 444 53.6
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.9e-124 449.5 406 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.0e-124 448.7 415 56.1
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.7e-122 442.2 418 58.9
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.2e-120 437.6 432 54.6
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 5.9e-117 425.2 424 53.5
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.0e-116 424.5 323 67.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 9.8e-112 407.9 369 59.3
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.7e-111 407.1 375 57.3
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.4e-105 387.5 420 51.0
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 1.5e-104 384.0 273 68.5
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.1e-101 373.6 377 56.8
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 2.5e-99 366.7 222 73.9
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.6e-98 362.8 380 54.2
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.2e-86 323.2 378 50.8
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-84 317.8 299 57.2
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.9e-78 297.4 167 80.8
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-73 281.2 239 64.9
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-73 281.2 246 63.0
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-62 244.2 207 57.0
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-62 244.2 207 57.0
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 202 57.9
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 202 57.9
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 202 57.9
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.4e-55 218.8 206 58.7
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.4e-55 218.8 206 58.7
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.4e-55 218.8 206 58.7
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 2.4e-49 200.7 110 80.9
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.6e-48 197.2 110 80.9
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.8e-36 155.6 122 63.1
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 9.7e-35 152.1 113 64.6
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 9.7e-35 152.1 88 77.3
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.1e-33 148.7 162 52.5
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-33 148.7 88 75.0
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.1e-33 146.7 99 70.7
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.5e-32 144.8 107 68.2
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 4.0e-28 130.2 76 75.0
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.8e-25 121.3 115 53.9
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.7e-24 117.5 148 46.6
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 6.5e-23 112.8 70 75.7
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 8.5e-23 112.5 111 59.5
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.5e-22 111.7 65 75.4
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.6e-21 107.1 138 52.9
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 9.8e-19 99.0 51 88.2
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.7e-18 98.2 57 77.2
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 2.3e-12 77.8 59 62.7
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 4.9e-10 70.1 37 81.1
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 1.1e-09 68.9 41 73.2


User provided reference genes

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