Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.3e-156 556.6 585 100.0
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 3.8e-111 406.4 583 76.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-105 387.9 583 75.3
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.4e-105 387.9 583 75.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 5.3e-105 386.0 589 76.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 9.0e-105 385.2 589 78.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 2.9e-103 380.2 581 74.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 3.2e-102 376.7 583 76.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 3.9e-100 369.8 585 71.5
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.1e-99 368.2 586 68.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 5.7e-99 365.9 585 73.7
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.8e-98 363.6 583 73.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.8e-98 362.8 583 74.3
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.1e-97 361.7 583 73.9
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.4e-97 361.3 583 79.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 5.3e-97 359.4 583 80.8
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.2e-96 358.2 583 76.2
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.9e-96 355.9 583 73.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.3e-95 354.8 583 66.6
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.2e-95 354.0 583 71.5
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 8.5e-95 352.1 583 78.2
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.1e-94 351.7 583 72.9
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.4e-94 351.3 583 79.1
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 3.2e-94 350.1 583 71.9
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 9.4e-94 348.6 583 75.6
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.6e-93 347.8 584 80.7
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 2.7e-93 347.1 583 70.5
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.6e-93 346.7 584 79.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.3e-92 344.0 581 67.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 3.0e-92 343.6 581 70.6
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.9e-92 343.2 584 80.1
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 5.1e-92 342.8 583 71.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 2.6e-91 340.5 583 70.2
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 7.4e-91 339.0 583 73.8
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 2.8e-90 337.0 583 74.3
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.4e-89 334.7 583 71.4
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.8e-89 334.3 583 78.2
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.2e-88 331.6 598 71.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.2e-88 331.6 582 69.6
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.6e-88 330.5 596 71.3
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.3e-87 328.2 583 73.9
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 5.0e-87 326.2 582 76.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 6.5e-87 325.9 434 83.6
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.5e-87 325.9 586 67.6
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.9e-86 324.3 583 70.7
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 3.2e-86 323.6 583 68.4
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 5.5e-86 322.8 583 65.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.2e-85 321.6 584 78.1
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.0e-84 318.5 581 68.0
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.4e-84 318.2 583 69.6
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 8.8e-84 315.5 584 72.4
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.6e-83 313.9 592 63.3
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 3.3e-83 313.5 583 64.3
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 5.7e-83 312.8 574 59.6
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 9.7e-83 312.0 564 75.9
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.7e-82 311.2 589 67.2
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.7e-82 311.2 583 52.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.7e-82 311.2 600 73.3
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.8e-82 310.5 562 77.9
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 4.8e-82 309.7 585 66.7
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.1e-81 308.5 585 71.5
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.1e-81 308.5 628 70.2
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.8e-81 307.8 583 79.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.8e-81 307.8 583 74.8
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.0e-80 304.3 583 63.0
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 4.5e-80 303.1 408 79.4
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.0e-79 302.0 501 72.1
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 6.5e-79 299.3 581 66.4
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.5e-78 298.1 562 77.0
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.5e-78 297.4 586 75.8
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.2e-77 295.0 589 65.5
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 6.1e-77 292.7 556 65.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.8e-74 283.1 501 70.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.8e-74 283.1 583 74.8
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 8.3e-74 282.3 563 65.9
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.0e-71 275.4 363 64.7
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.3e-71 275.0 562 69.9
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 6.5e-71 272.7 591 62.4
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.1e-70 271.9 562 65.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.5e-70 271.6 576 69.1
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.2e-70 270.4 501 58.9
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 4.7e-69 266.5 583 66.6
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 4.7e-69 266.5 581 64.5
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 6.8e-68 262.7 408 69.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.6e-67 260.8 649 57.9
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 6.3e-66 256.1 683 59.0
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 8.3e-66 255.8 434 71.7
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.4e-65 254.2 501 65.9
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.0e-63 248.8 602 58.3
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 8.0e-61 239.2 583 60.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.3e-60 237.7 562 66.9
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.2e-58 231.1 593 61.6
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 9.2e-57 225.7 324 62.3
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 9.5e-54 215.7 237 62.0
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.2e-53 215.3 518 66.6
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 3.4e-51 207.2 543 68.3
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.7e-50 204.9 589 59.8
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.7e-50 203.8 313 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.2e-49 200.7 590 52.5
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.3e-47 195.3 583 64.7
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 3.0e-47 194.1 559 36.5
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.5e-46 191.8 301 51.5
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.6e-40 171.8 561 48.0
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 3.2e-33 147.5 198 65.2
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.5e-30 138.7 236 47.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 7.8e-24 116.3 97 62.9
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 3.0e-23 114.4 74 74.3
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 3.0e-23 114.4 74 74.3
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.6e-23 113.2 74 73.0
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 74 73.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.9e-22 111.7 74 73.0
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.1e-21 108.2 97 59.8
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.5e-19 102.1 82 65.9
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 5.8e-19 100.1 104 56.7
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 3.9e-15 87.4 59 66.1
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.9e-14 85.1 100 76.0
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.5e-14 84.7 52 73.1
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 7.3e-14 83.2 68 61.8
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 2.8e-13 81.3 104 78.8
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 2.8e-13 81.3 104 78.8
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 2.8e-13 81.3 104 78.8
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.8e-11 73.6 74 45.9
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 7.6e-11 73.2 98 69.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.3e-10 72.4 44 81.8
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 4.2e-09 67.4 225 55.6
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.9e-06 58.5 74 41.9
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 9.6e-06 56.2 39 66.7


User provided reference genes

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