Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.0e-154 550.4 340 100.0
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.5e-105 387.1 288 72.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 5.8e-105 385.2 306 71.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.1e-103 380.9 304 66.1
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.7e-101 373.6 274 73.4
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 3.0e-101 372.9 278 74.1
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.0e-101 372.9 304 68.4
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 3.0e-101 372.9 305 64.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 5.0e-101 372.1 277 72.2
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.3e-100 369.4 273 75.5
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.3e-100 369.0 294 68.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 7.3e-100 368.2 278 74.8
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.6e-99 367.1 277 70.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.8e-99 366.3 275 74.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.8e-99 366.3 304 71.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.6e-99 365.9 318 68.6
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.7e-99 365.5 289 72.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 6.2e-99 365.2 309 68.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.3e-98 363.2 300 64.3
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 5.2e-98 362.1 275 66.5
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.8e-98 361.7 313 72.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 8.9e-98 361.3 279 71.3
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.2e-97 360.9 276 72.1
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.6e-97 359.8 300 65.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.6e-97 359.8 267 73.8
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.4e-97 359.4 297 66.0
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 7.5e-97 358.2 248 74.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.3e-96 357.5 325 61.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.2e-96 356.7 312 64.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.2e-96 356.7 298 65.4
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.9e-96 356.3 281 65.1
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.7e-96 355.9 311 67.8
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.1e-95 354.4 284 67.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 7.1e-95 351.7 278 64.4
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.2e-94 350.9 312 64.4
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.2e-94 350.9 272 72.4
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.0e-94 348.6 303 66.3
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.3e-93 346.7 298 62.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.0e-93 346.3 296 67.9
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.9e-93 345.9 285 66.0
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 5.1e-93 345.5 309 63.8
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 8.6e-93 344.7 279 63.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.1e-92 344.4 277 70.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.5e-92 344.0 280 68.2
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.5e-92 344.0 311 67.8
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.5e-92 343.2 298 66.4
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.6e-92 342.0 349 58.7
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 9.5e-92 341.3 272 66.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.2e-91 340.9 298 61.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 4.7e-91 339.0 307 62.2
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 6.2e-91 338.6 248 74.2
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.2e-91 338.6 291 58.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 6.2e-91 338.6 275 67.3
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.1e-90 337.8 296 63.5
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.0e-90 335.9 275 63.3
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.2e-89 334.3 296 71.3
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.0e-89 333.6 296 66.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.0e-89 333.6 289 62.3
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.8e-89 332.0 304 65.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.3e-88 330.9 232 68.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-88 330.5 199 80.4
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.9e-88 329.7 283 62.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 6.4e-88 328.6 199 79.4
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.4e-87 327.4 275 69.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.4e-87 327.4 268 72.4
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.9e-87 327.0 295 66.8
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.2e-87 326.2 296 68.2
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.1e-87 325.9 311 66.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 4.1e-87 325.9 298 66.8
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 5.4e-87 325.5 205 74.1
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 9.2e-87 324.7 295 68.1
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 9.2e-87 324.7 271 69.0
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.6e-86 323.9 267 74.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.6e-86 323.9 225 70.2
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.1e-86 323.6 313 65.5
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.3e-85 320.1 276 64.5
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 2.3e-85 320.1 290 71.4
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 3.0e-85 319.7 290 71.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 5.1e-85 318.9 290 71.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 5.1e-85 318.9 270 70.7
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 8.7e-85 318.2 303 65.3
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.1e-84 317.8 283 70.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.1e-84 317.8 201 74.1
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.5e-84 317.4 309 65.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.9e-84 317.0 273 65.2
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.5e-84 316.6 307 67.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.5e-84 316.6 307 67.4
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.3e-84 316.2 300 65.3
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 4.3e-84 315.8 309 65.4
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 5.6e-84 315.5 297 68.4
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.6e-84 315.5 297 68.4
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.6e-84 315.5 294 61.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 9.6e-84 314.7 293 59.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 3.6e-83 312.8 286 63.6
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 8.1e-83 311.6 277 65.0
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.1e-82 311.2 296 65.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 4.0e-82 309.3 263 65.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.0e-82 308.1 297 67.3
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.8e-80 302.8 245 65.3
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 8.4e-80 301.6 308 66.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 8.4e-80 301.6 273 58.6
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.4e-79 300.8 276 57.2
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 4.6e-78 295.8 279 69.9
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.3e-77 294.3 279 68.8
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-72 277.7 298 60.1
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.2e-72 276.9 257 70.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.2e-71 272.7 177 71.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.3e-69 267.7 257 60.3
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 6.9e-66 255.4 233 55.8
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.2e-62 244.6 266 53.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.7e-62 243.4 280 55.4
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.8e-61 240.7 143 83.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.9e-61 239.6 286 47.9
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.3e-52 209.9 198 50.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.2e-49 201.4 304 40.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 6.5e-48 195.7 292 50.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.1e-46 190.7 269 45.7
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 9.7e-44 181.8 135 61.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.2e-43 180.6 116 74.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 6.3e-35 152.5 94 76.6
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 6.3e-35 152.5 96 75.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-34 149.4 287 34.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.2e-33 148.3 246 36.6
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.7e-33 145.6 178 46.6
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.9e-32 143.7 177 39.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.0e-25 120.9 150 62.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-24 116.3 192 30.2
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 7.2e-23 112.5 69 76.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.4e-20 103.2 197 32.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.1e-18 95.5 104 49.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 4.2e-15 86.7 161 36.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.5e-12 78.2 183 28.4
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 9.8e-12 75.5 186 28.5
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 9.1e-10 68.9 43 74.4
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.8e-08 63.5 46 69.6
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 6.6e-08 62.8 95 29.5


User provided reference genes

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