Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.6e-200 702.6 359 100.0
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.7e-159 564.3 343 82.5
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.5e-158 563.1 361 79.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.3e-158 562.0 362 81.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 5.6e-158 561.2 362 80.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 362 79.3
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.8e-157 558.9 338 83.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.7e-157 558.5 347 81.8
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.8e-157 558.1 337 82.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 8.2e-157 557.4 336 82.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.4e-156 555.8 362 79.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.0e-156 555.1 361 79.8
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 5.3e-156 554.7 349 81.4
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 9.0e-156 553.9 360 78.9
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.0e-155 552.7 362 79.0
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.6e-155 552.4 343 80.8
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.6e-155 552.4 334 83.2
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-155 552.4 347 81.6
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.6e-155 552.4 346 82.4
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.4e-155 552.0 334 82.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.4e-155 552.0 361 78.7
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.4e-155 552.0 347 80.7
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 4.5e-155 551.6 346 80.9
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 5.8e-155 551.2 347 81.3
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.8e-155 551.2 346 82.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.9e-154 548.9 346 80.9
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.9e-154 548.9 351 80.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.8e-154 548.5 345 81.4
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.8e-154 548.5 341 80.4
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.9e-154 548.1 347 81.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.9e-154 548.1 347 81.0
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 4.9e-154 548.1 364 78.3
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.5e-154 547.7 341 80.4
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 6.5e-154 547.7 345 80.6
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 6.5e-154 547.7 343 79.6
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 8.4e-154 547.4 328 83.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.1e-153 547.0 343 79.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.4e-153 546.6 343 79.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.4e-153 546.6 348 79.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.4e-153 546.6 338 80.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.9e-153 546.2 337 81.6
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-153 546.2 349 81.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-153 546.2 349 79.1
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-153 546.2 349 79.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.5e-153 545.8 341 80.1
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.5e-153 545.8 341 80.1
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.5e-153 545.8 341 80.1
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.2e-153 545.4 343 79.9
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 4.2e-153 545.0 361 77.3
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 5.5e-153 544.7 327 82.6
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 7.1e-153 544.3 346 80.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-152 543.1 341 79.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.7e-152 542.3 344 79.1
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.5e-152 542.0 345 80.0
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.6e-152 541.6 323 83.3
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 7.9e-152 540.8 351 77.8
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 7.9e-152 540.8 331 81.0
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.9e-152 540.8 327 82.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.3e-151 540.0 325 82.2
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.3e-151 540.0 327 81.3
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.8e-151 539.7 326 81.9
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-151 539.7 364 77.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.8e-151 539.7 352 79.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.9e-151 538.5 324 83.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 5.1e-151 538.1 351 77.5
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 5.1e-151 538.1 351 77.5
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 5.1e-151 538.1 345 80.0
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 6.7e-151 537.7 345 78.6
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.7e-151 537.3 372 75.3
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.1e-150 537.0 327 81.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.9e-150 536.2 335 78.8
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.5e-150 535.8 345 79.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.5e-150 535.8 345 79.1
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.3e-150 535.4 335 78.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.7e-150 534.6 345 79.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.7e-150 533.9 325 81.5
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.3e-149 533.5 363 75.2
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.3e-149 533.5 333 81.1
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.6e-149 533.1 355 76.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.2e-149 532.7 327 81.3
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.3e-149 531.2 327 82.0
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 6.3e-149 531.2 339 79.6
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-148 528.1 342 77.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.6e-147 525.8 334 79.6
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.0e-146 523.9 347 76.7
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-146 523.5 351 77.2
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.2e-146 522.7 335 78.2
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.9e-146 522.3 329 80.2
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.5e-146 521.2 380 71.3
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.9e-145 519.6 325 79.1
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.5e-145 519.2 344 77.6
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.2e-145 518.8 323 80.5
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.1e-144 516.2 331 77.6
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 7.9e-144 514.2 326 78.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.8e-143 513.1 297 85.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.8e-143 513.1 351 74.9
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.7e-143 511.1 329 79.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 8.8e-143 510.8 351 74.6
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-142 508.1 352 75.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 9.7e-142 507.3 370 71.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.4e-140 503.4 327 78.9
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.0e-139 499.6 395 67.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.4e-139 498.8 377 69.8
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 4.5e-139 498.4 297 83.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.4e-135 486.9 336 75.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.4e-134 481.1 323 71.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.2e-133 479.6 378 68.3
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 3.7e-133 478.8 345 72.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 3.1e-132 475.7 331 73.4
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.2e-131 473.8 352 69.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 7.7e-131 471.1 283 83.4
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.9e-129 466.5 326 73.9
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 2.0e-126 456.4 333 67.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.1e-124 450.7 334 65.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 7.0e-124 448.0 272 84.9
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 3.5e-123 445.7 336 69.9
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.5e-123 445.7 319 71.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.0e-122 444.1 334 66.2
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-122 443.7 324 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.2e-122 443.0 334 65.9
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.2e-120 437.2 347 64.6
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.4e-119 433.7 287 78.7
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.2e-119 431.8 301 71.4
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-116 423.7 364 62.4
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-116 423.3 259 80.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.5e-114 414.8 322 62.7
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 9.4e-113 411.0 356 57.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.0e-107 393.3 253 77.1
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.7e-107 392.9 272 76.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-106 391.0 344 62.2
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 7.2e-105 384.8 241 80.9
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-105 384.4 245 79.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.8e-104 382.9 299 63.5
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.1e-104 381.7 273 67.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.0e-104 381.3 334 61.4
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.0e-103 379.0 367 56.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-100 370.9 273 69.6
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-98 363.2 238 74.4
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.9e-98 362.8 343 55.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.9e-98 362.5 362 58.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.6e-98 361.7 233 79.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.2e-95 352.1 239 74.9
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.0e-82 311.2 197 77.2
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 3.6e-72 276.2 203 73.4
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.7e-72 275.8 286 57.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.4e-60 235.7 311 45.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 3.9e-58 229.6 162 71.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.6e-56 224.2 161 67.1
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 8.4e-53 211.8 130 79.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.5e-51 206.5 133 76.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-49 201.4 228 54.4
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.6e-49 199.1 363 41.9
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 9.0e-47 191.8 113 81.4
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.2e-45 187.2 233 40.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 8.7e-42 175.3 208 47.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.2e-37 160.6 103 75.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.9e-35 152.1 92 80.4
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 3.0e-34 150.2 88 79.5
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.9e-33 147.5 95 70.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.2e-32 144.1 96 77.1
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-31 141.0 100 68.0
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.5e-30 137.9 110 68.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-30 137.5 76 86.8
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 7.2e-28 129.0 84 71.4
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.6e-27 127.9 189 48.1
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.0e-21 108.6 74 74.3
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.6e-19 101.3 88 61.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 7.9e-19 99.0 75 62.7
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.1e-18 96.3 73 58.9
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 6.7e-18 95.9 62 77.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 8.8e-18 95.5 73 71.2
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 9.7e-17 92.0 75 58.7
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.3e-13 81.6 78 61.5
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 3.5e-06 57.0 44 65.9


User provided reference genes

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