Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 0.0e+00 1203.7 657 100.0
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.4e-257 890.6 654 69.7
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.5e-249 866.3 654 71.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.8e-248 862.1 657 67.7
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 4.8e-248 861.3 657 68.2
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 5.9e-246 854.4 657 66.5
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.6e-241 839.0 658 66.7
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 7.5e-241 837.4 659 65.7
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 9.8e-241 837.0 658 65.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.7e-240 836.3 655 64.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.2e-240 835.9 658 65.2
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.8e-240 835.5 658 65.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 2.8e-240 835.5 659 66.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 6.3e-240 834.3 654 65.1
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-239 833.2 658 66.4
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 4.1e-239 831.6 655 64.6
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.7e-238 828.9 656 65.4
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.0e-234 815.1 655 62.7
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.0e-233 812.8 656 64.5
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 2.6e-233 812.4 661 64.6
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.8e-233 810.4 655 62.3
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 3.1e-231 805.4 655 62.3
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 3.1e-231 805.4 653 62.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.2e-230 803.5 658 63.7
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.3e-228 795.4 657 63.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.3e-228 795.0 660 63.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.2e-227 793.5 657 61.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 3.6e-227 792.0 654 62.1
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.7e-227 791.6 658 62.6
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 6.8e-226 787.7 655 61.4
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.3e-224 783.5 653 61.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 3.7e-224 781.9 658 60.3
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 4.9e-224 781.6 655 62.1
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.4e-223 779.2 652 62.0
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.4e-223 779.2 659 61.3
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 5.4e-223 778.1 649 62.9
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 9.2e-223 777.3 654 61.2
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.6e-222 776.5 657 66.1
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 3.5e-222 775.4 654 61.0
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 2.3e-221 772.7 654 59.5
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 2.1e-219 766.1 654 58.6
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 3.6e-219 765.4 655 59.4
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 6.2e-219 764.6 655 63.5
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.3e-218 762.7 657 59.5
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 3.1e-218 762.3 659 61.3
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 7.5e-217 757.7 655 58.9
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.7e-216 756.5 662 59.4
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.9e-216 755.7 659 60.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.7e-216 755.4 662 59.5
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.1e-215 753.8 655 58.9
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 9.2e-215 750.7 662 58.9
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 3.9e-213 745.3 660 58.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.5e-212 743.4 658 59.0
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 9.5e-212 740.7 649 58.6
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 4.7e-211 738.4 659 58.0
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.1e-210 737.3 655 58.3
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.4e-210 736.9 658 59.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 4.0e-210 735.3 649 59.0
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.2e-209 733.8 679 56.7
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.0e-209 733.0 602 63.0
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 7.5e-209 731.1 602 62.3
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.7e-208 729.9 652 58.0
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.9e-208 728.4 656 57.5
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 4.9e-208 728.4 656 57.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.3e-208 727.6 663 57.9
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.1e-207 727.2 656 57.6
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.9e-207 726.5 658 58.1
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 9.2e-207 724.2 651 57.8
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.7e-206 722.6 664 55.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.0e-206 721.5 654 56.7
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.0e-205 719.2 660 56.8
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 7.3e-204 714.5 656 61.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.8e-203 712.6 668 56.6
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 6.2e-203 711.4 665 57.3
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 8.1e-203 711.1 655 56.2
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.1e-202 709.1 653 56.7
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 6.8e-202 708.0 656 56.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.2e-201 707.2 652 60.6
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 4.9e-200 701.8 652 56.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-199 700.3 652 56.6
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 5.4e-199 698.4 652 56.4
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 5.4e-199 698.4 658 56.4
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.6e-198 696.8 516 69.2
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.1e-198 696.4 655 56.0
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.1e-198 696.4 655 56.0
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 6.0e-198 694.9 659 56.3
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 4.3e-196 688.7 659 54.3
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.6e-195 685.6 649 55.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.6e-195 685.6 654 54.3
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 9.3e-191 671.0 655 52.4
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.8e-186 656.8 665 52.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 5.3e-186 655.2 645 55.8
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.3e-184 650.6 492 66.9
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.7e-184 650.2 684 51.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.9e-181 639.0 655 54.4
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 5.3e-178 628.6 652 52.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.9e-173 612.5 665 49.3
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.4e-170 604.0 662 50.5
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.9e-168 595.5 658 50.6
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 3.8e-144 516.2 421 64.1
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.2e-132 478.0 360 66.7
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.7e-132 475.7 519 50.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.3e-128 464.5 359 65.2
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.8e-125 452.2 485 50.1
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.3e-115 421.4 596 44.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 4.5e-113 412.9 667 36.6
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 6.8e-101 372.5 648 35.2
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 9.5e-95 352.1 662 35.2
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 9.5e-95 352.1 364 51.1
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.7e-91 341.3 513 39.2
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 5.4e-74 283.1 237 59.9
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.1e-71 275.4 757 29.3
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.2e-65 255.4 283 44.9
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 6.2e-62 243.0 632 29.0
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-54 218.8 229 51.1
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.7e-54 217.2 274 43.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 2.0e-52 211.5 221 51.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 2.3e-48 198.0 353 35.7
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.2e-34 151.0 128 63.3
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 4.2e-34 150.6 81 82.7
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 4.8e-30 137.1 222 36.9
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.7e-25 121.3 101 53.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 5.2e-24 117.1 213 34.3
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.7e-23 113.6 86 55.8
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.7e-22 112.1 73 68.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.3e-21 107.1 73 67.1
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.6e-20 104.8 73 65.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.7e-19 102.1 65 80.0
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.5e-19 100.1 169 39.6
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 4.7e-17 94.0 324 27.8
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.7e-14 85.5 100 50.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.8e-13 82.0 93 45.2
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.1e-13 80.9 69 58.0
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 5.9e-12 77.0 73 54.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.2e-07 62.8 215 26.0
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 3.4e-07 61.2 54 51.9


User provided reference genes

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