Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.8e-176 622.5 313 100.0
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.0e-175 619.0 313 99.4
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 8.2e-105 384.4 325 63.7
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 3.1e-104 382.5 325 63.4
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 2.9e-102 375.9 324 63.3
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 4.7e-100 368.6 326 60.4
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 5.2e-99 365.2 320 61.9
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 3.7e-97 359.0 333 60.1
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 7.0e-96 354.8 330 58.2
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 2.0e-95 353.2 332 58.7
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.0e-95 353.2 325 58.2
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 2.7e-95 352.8 320 60.3
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 3.5e-95 352.4 323 61.0
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 4.5e-95 352.1 318 59.1
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 4.5e-95 352.1 333 56.8
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 7.7e-95 351.3 325 57.8
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 1.7e-94 350.1 320 60.3
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.5e-93 346.3 325 57.8
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 4.2e-93 345.5 318 58.8
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 4.2e-93 345.5 329 58.1
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 7.2e-93 344.7 321 60.1
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.6e-92 343.6 323 58.8
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.8e-92 342.8 315 60.0
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 4.7e-92 342.0 319 58.3
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 4.7e-92 342.0 319 58.0
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 6.1e-92 341.7 319 58.3
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 1.0e-91 340.9 317 59.3
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 1.4e-91 340.5 331 56.5
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.8e-91 340.1 328 57.3
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 2.3e-91 339.7 319 58.9
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 4.0e-91 339.0 320 56.9
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.2e-90 337.4 321 58.3
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-90 336.7 315 61.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-90 336.7 327 59.3
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.6e-90 336.3 327 59.0
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.7e-89 333.6 315 60.0
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.7e-89 333.6 315 60.0
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 2.4e-88 329.7 323 54.8
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 9.2e-88 327.8 317 57.4
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 1.6e-87 327.0 330 55.5
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 2.7e-87 326.2 317 57.7
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.5e-87 325.9 328 55.8
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.5e-87 325.9 328 55.8
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 5.9e-87 325.1 318 57.2
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.3e-86 323.2 320 55.9
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 8.6e-86 321.2 313 55.9
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 4.3e-85 318.9 314 55.1
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 7.3e-85 318.2 323 55.7
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 2.1e-84 316.6 322 55.0
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 3.6e-84 315.8 322 55.3
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 6.1e-84 315.1 337 52.5
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.0e-83 314.3 327 53.5
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 4.0e-83 312.4 313 54.0
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 4.0e-83 312.4 322 52.8
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 6.8e-83 311.6 318 55.3
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 7.5e-82 308.1 320 53.4
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 7.5e-82 308.1 322 54.3
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 1.7e-81 307.0 316 55.4
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 2.2e-81 306.6 328 54.9
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 2.2e-81 306.6 323 53.9
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 6.4e-81 305.1 320 54.1
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 6.4e-81 305.1 325 54.5
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 1.1e-80 304.3 320 52.8
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 3.2e-80 302.8 320 52.2
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.0e-79 300.1 320 52.5
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 6.0e-79 298.5 320 51.9
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.3e-78 297.4 306 54.9
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.3e-78 296.6 333 50.8
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.3e-78 296.6 329 51.4
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 5.6e-77 292.0 315 51.4
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.2e-76 290.8 313 51.1
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 2.8e-76 289.7 371 46.4
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.1e-75 287.7 317 54.3
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 1.1e-75 287.7 313 51.1
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 2.3e-75 286.6 333 52.3
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 1.5e-74 283.9 313 52.1
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 2.9e-73 279.6 313 50.2
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 3.7e-73 279.3 314 51.0
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 3.2e-72 276.2 312 53.8
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 3.2e-72 276.2 312 53.8
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 4.1e-72 275.8 313 53.7
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 4.1e-72 275.8 294 54.4
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 7.0e-72 275.0 313 54.0
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 6.0e-71 271.9 332 50.0
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 7.8e-71 271.6 309 50.8
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 2.3e-70 270.0 327 48.3
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 3.9e-70 269.2 314 48.7
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 5.1e-70 268.9 313 48.6
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.1e-69 267.7 323 48.0
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.9e-69 266.9 321 49.5
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 5.6e-69 265.4 328 47.9
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.1e-67 261.2 311 48.2
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 5.2e-67 258.8 320 50.0
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 6.8e-67 258.5 332 45.2
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.7e-65 253.8 331 45.9
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 2.4e-64 250.0 325 46.8
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 2.1e-63 246.9 170 68.8
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 6.0e-63 245.4 161 72.7
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 3.4e-58 229.6 319 43.3
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 7.6e-58 228.4 413 39.7
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 1.7e-57 227.3 319 42.3
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 3.8e-57 226.1 321 44.2
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 4.9e-49 199.1 328 39.9
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 2.4e-43 180.3 314 41.7
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 4.5e-42 176.0 315 35.2
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 4.2e-40 169.5 194 50.5
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.0e-38 164.9 170 52.9
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 8.7e-38 161.8 201 44.3
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 3.7e-36 156.4 240 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 3.1e-35 153.3 145 49.0
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 4.5e-34 149.4 199 43.2
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 2.1e-31 140.6 317 35.3
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 5.6e-29 132.5 262 40.1
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 4.0e-27 126.3 347 30.8
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 5.3e-27 125.9 137 46.7
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 3.5e-23 113.2 194 37.6
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 1.3e-22 111.3 153 42.5
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 3.3e-21 106.7 229 34.9
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 5.7e-21 105.9 205 36.1
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 4.8e-20 102.8 134 46.3
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.4e-19 101.3 229 34.1
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 4.5e-18 96.3 57 64.9
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 7.7e-18 95.5 57 63.2
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 6.1e-07 59.3 76 43.4
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 5.1e-06 56.2 108 36.1


User provided reference genes

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