Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.2e-196 688.7 340 100.0
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 9.1e-166 587.0 333 86.8
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.0e-164 583.6 330 87.9
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 3.8e-164 581.6 340 84.7
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.9e-163 579.3 325 87.4
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.2e-162 576.6 334 85.9
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.6e-162 576.2 322 87.9
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 2.7e-162 575.5 337 83.7
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 4.7e-162 574.7 325 86.5
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 6.1e-162 574.3 331 84.9
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 8.0e-162 573.9 325 87.1
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.8e-161 572.8 334 85.6
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.0e-161 572.0 324 85.8
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 3.0e-161 572.0 324 85.8
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-160 568.9 340 83.2
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-160 568.9 340 83.2
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.6e-160 568.9 326 85.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.6e-160 568.9 340 83.5
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.6e-160 568.9 339 82.3
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 3.4e-160 568.5 325 86.2
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 4.4e-160 568.2 325 85.2
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 7.5e-160 567.4 327 85.3
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.5e-160 567.4 340 82.9
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 2.2e-159 565.8 326 85.0
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 8.3e-159 563.9 327 83.8
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 8.3e-159 563.9 331 83.1
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 8.3e-159 563.9 333 84.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 1.4e-158 563.1 327 84.4
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.4e-158 563.1 340 82.6
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.1e-158 561.6 334 81.1
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 5.3e-158 561.2 327 83.5
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.2e-157 560.1 332 82.5
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.6e-157 559.7 331 82.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.0e-157 559.3 319 85.9
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.0e-157 559.3 326 84.0
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 5.9e-157 557.8 328 82.9
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 6.5e-156 554.3 328 83.5
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.1e-155 553.5 328 81.7
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.1e-155 553.5 335 80.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.1e-155 553.5 332 82.8
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.9e-155 552.7 332 81.3
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 5.5e-155 551.2 327 81.3
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 5.5e-155 551.2 335 80.6
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 7.2e-155 550.8 335 80.6
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 7.2e-155 550.8 328 81.7
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.2e-154 550.1 335 80.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.6e-154 549.7 332 79.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 2.1e-154 549.3 330 81.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 3.6e-154 548.5 328 82.6
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 4.7e-154 548.1 327 81.7
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 4.7e-154 548.1 332 79.2
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 6.1e-154 547.7 323 82.7
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.8e-153 546.2 330 81.5
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 3.0e-153 545.4 328 80.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 3.0e-153 545.4 353 77.9
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.5e-152 543.1 320 83.1
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.5e-152 543.1 320 82.8
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.5e-152 543.1 323 82.4
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 2.0e-152 542.7 339 78.2
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 2.6e-152 542.3 322 82.9
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 2.6e-152 542.3 333 79.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 4.4e-152 541.6 337 77.4
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.7e-152 541.2 328 81.4
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 7.5e-152 540.8 334 79.3
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 7.5e-152 540.8 328 80.2
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.2e-151 539.3 333 79.6
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 3.1e-150 535.4 339 77.3
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 7.0e-150 534.3 330 79.1
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 9.1e-150 533.9 326 79.1
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 8.6e-148 527.3 308 83.8
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-147 526.9 331 78.2
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.5e-147 525.8 334 77.5
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.2e-146 523.5 324 78.1
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.6e-146 523.1 333 78.4
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 3.6e-146 521.9 326 77.6
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 3.6e-146 521.9 333 78.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 4.7e-146 521.5 324 78.7
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 1.4e-145 520.0 325 77.8
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.0e-145 518.8 331 76.4
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 1.2e-144 516.9 326 77.6
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 3.4e-144 515.4 293 87.7
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.4e-142 509.2 329 76.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.4e-142 509.2 329 76.0
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.2e-141 506.9 325 76.3
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 4.5e-141 505.0 329 75.7
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 5.9e-141 504.6 325 76.0
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.9e-141 504.6 324 75.0
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 2.9e-140 502.3 292 84.9
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.9e-139 499.6 321 76.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.6e-139 498.0 292 83.9
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.2e-138 496.9 299 81.6
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.8e-138 495.7 329 72.3
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 4.0e-137 491.9 331 73.1
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 5.2e-137 491.5 329 76.3
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.6e-136 489.2 298 81.9
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 9.8e-136 487.3 353 68.6
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.3e-135 486.9 327 73.4
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.2e-133 480.3 255 89.4
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.3e-131 471.1 259 86.5
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.1e-130 469.5 347 70.3
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.6e-130 468.8 259 86.1
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.3e-129 466.1 320 75.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.8e-129 464.5 264 84.5
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 6.4e-127 458.0 344 69.2
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 6.4e-127 458.0 289 76.8
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.2e-122 443.7 279 78.9
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.0e-116 424.1 256 81.2
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 7.3e-115 417.9 231 87.0
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.4e-110 403.7 227 86.8
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.3e-106 390.6 330 60.0
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.3e-103 380.6 327 58.1
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 7.1e-102 374.8 332 56.9
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.5e-83 313.2 209 77.0
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.8e-82 309.7 277 62.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.8e-81 307.0 356 48.3
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.5e-80 303.9 213 66.7
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.1e-73 279.6 175 78.9
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.5e-67 260.8 146 85.6
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.3e-63 247.7 207 61.8
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.0e-60 238.0 208 62.0
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 7.5e-51 205.3 322 43.2
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 9.7e-51 204.9 312 37.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 2.2e-50 203.8 177 61.6
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 5.3e-49 199.1 245 45.7
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.3e-42 177.9 360 34.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.7e-40 170.2 114 74.6
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 3.6e-37 159.8 231 48.5
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.2e-35 154.8 108 70.4
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 5.7e-35 152.5 318 35.5
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.5e-22 111.3 250 35.6
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 3.4e-19 100.1 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 9.2e-17 92.0 98 52.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 2.3e-15 87.4 45 88.9
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 2.8e-13 80.5 55 69.1
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 2.3e-12 77.4 78 53.8
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 2.7e-08 63.9 30 90.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.9e-07 60.1 41 75.6


User provided reference genes

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