Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.7e-63 246.1 156 100.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.3e-47 193.4 123 79.7
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 5.1e-47 191.4 152 77.6
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 5.1e-47 191.4 123 80.5
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 5.1e-47 191.4 124 79.8
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.5e-46 189.9 123 78.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.9e-46 189.5 123 78.0
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 4.3e-46 188.3 122 79.5
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 4.3e-46 188.3 121 77.7
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 4.3e-46 188.3 121 77.7
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 5.6e-46 188.0 121 78.5
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 7.4e-46 187.6 123 75.6
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 7.4e-46 187.6 121 79.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.6e-46 187.2 121 78.5
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.6e-46 187.2 121 78.5
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 9.6e-46 187.2 121 79.3
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 9.6e-46 187.2 121 78.5
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 77.2
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.6e-45 186.4 123 74.8
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.6e-45 186.4 124 75.0
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.1e-45 186.0 124 75.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.1e-45 186.0 122 77.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.1e-45 186.0 119 79.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 77.2
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 77.2
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 6.2e-45 184.5 121 77.7
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 6.2e-45 184.5 119 78.2
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 6.2e-45 184.5 122 77.9
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 8.2e-45 184.1 123 76.4
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.1e-44 183.7 123 74.8
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 77.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 77.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.4e-44 183.3 124 72.6
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.8e-44 183.0 121 76.9
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.8e-44 183.0 123 73.2
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-44 183.0 122 77.9
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.4e-44 182.6 123 74.0
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.4e-44 182.6 124 75.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.4e-44 182.6 123 75.6
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.4e-44 182.6 125 74.4
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 3.1e-44 182.2 123 73.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 5.3e-44 181.4 164 62.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.3e-44 181.4 121 76.9
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.3e-44 181.4 125 73.6
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 5.3e-44 181.4 121 76.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 72.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 72.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 72.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 72.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 74.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 9.0e-44 180.6 123 73.2
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 9.0e-44 180.6 123 74.0
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 9.0e-44 180.6 123 73.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.2e-43 180.3 123 71.5
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-43 180.3 121 76.9
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.5e-43 179.9 123 74.8
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.5e-43 179.9 121 76.0
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-43 179.5 124 73.4
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.0e-43 179.5 124 74.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 123 73.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 2.0e-43 179.5 121 75.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.6e-43 179.1 132 69.7
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.6e-43 179.1 124 72.6
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 3.4e-43 178.7 125 72.8
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.4e-43 178.7 121 76.0
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.5e-43 178.3 152 76.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 4.5e-43 178.3 123 74.0
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 4.5e-43 178.3 153 74.5
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 4.5e-43 178.3 121 73.6
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 7.6e-43 177.6 124 72.6
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.0e-42 177.2 153 73.9
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.0e-42 177.2 153 73.9
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.0e-42 177.2 123 72.4
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.0e-42 177.2 153 76.5
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 1.3e-42 176.8 151 74.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.2e-42 176.0 123 71.5
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 2.2e-42 176.0 121 72.7
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.8e-42 175.3 123 73.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.8e-42 175.3 123 70.7
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.8e-42 175.3 123 70.7
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 4.9e-42 174.9 124 72.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 4.9e-42 174.9 123 70.7
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 6.5e-42 174.5 122 73.0
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 6.5e-42 174.5 153 71.9
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.4e-41 173.3 122 71.3
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.4e-41 173.3 121 71.9
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.9e-41 172.9 122 73.0
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 3.2e-41 172.2 123 69.9
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.2e-41 172.2 152 71.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 5.5e-41 171.4 123 69.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.6e-40 169.9 123 71.5
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.7e-40 169.1 123 71.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 7.9e-40 167.5 122 69.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.9e-40 167.5 121 70.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 7.9e-40 167.5 125 68.8
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.0e-39 167.2 122 68.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.3e-39 166.8 123 68.3
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.3e-39 166.8 121 69.4
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-39 166.8 121 69.4
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-39 166.8 121 69.4
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.3e-39 166.0 125 67.2
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.3e-39 166.0 124 67.7
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.0e-39 165.6 120 70.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 8.7e-39 164.1 124 67.7
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 8.7e-39 164.1 116 71.6
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.3e-38 162.2 119 66.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 6.3e-37 157.9 201 48.8
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 2.4e-36 156.0 123 66.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.6e-35 152.5 124 60.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.9e-35 151.4 194 47.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.0e-34 150.6 123 67.5
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.3e-34 150.2 121 63.6
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 3.8e-34 148.7 123 63.4
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 3.8e-34 148.7 99 74.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 5.0e-34 148.3 124 59.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 5.0e-34 148.3 124 58.9
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.1e-33 147.1 124 59.7
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-33 146.7 101 74.3
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 2.1e-32 142.9 97 74.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 2.7e-32 142.5 97 74.2
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.1e-32 141.4 97 74.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.4e-31 140.2 123 59.3
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 8.8e-31 137.5 124 56.5
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.1e-30 137.1 122 55.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 3.3e-30 135.6 90 75.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.7e-29 133.3 124 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 9.1e-28 127.5 124 52.4
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.5e-27 125.2 124 50.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.3e-26 123.6 122 50.8
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.5e-25 119.4 83 72.3
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-20 103.6 79 68.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.6e-19 99.4 94 53.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.6e-19 99.4 94 53.2
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.3e-18 97.1 101 53.5
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-17 93.2 64 67.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.8e-15 84.3 95 52.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.3e-10 70.5 70 60.0
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 2.9e-10 69.3 83 53.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 2.9e-10 69.3 83 53.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.8e-10 68.9 52 59.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 2.7e-08 62.8 46 60.9


User provided reference genes

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