Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 6.6e-78 293.9 141 100.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 6.7e-38 161.0 144 61.8
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.1e-35 151.8 142 58.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 6.9e-35 151.0 143 60.1
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 6.9e-35 151.0 146 58.9
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.5e-34 149.8 142 58.5
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.0e-34 149.4 142 57.7
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 3.4e-34 148.7 142 59.2
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.5e-34 148.3 141 56.7
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 5.9e-34 147.9 142 57.7
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.7e-33 146.4 142 54.9
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.7e-33 146.4 142 57.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.2e-33 146.0 135 57.0
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 2.9e-33 145.6 144 55.6
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.8e-33 145.2 140 57.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 3.8e-33 145.2 141 56.0
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.8e-33 145.2 140 57.9
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 5.0e-33 144.8 143 55.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 6.5e-33 144.4 142 55.6
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.5e-33 144.4 140 56.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 6.5e-33 144.4 146 56.2
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 8.5e-33 144.1 142 55.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-32 143.7 143 55.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.4e-32 143.3 142 55.6
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.9e-32 142.9 147 56.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.5e-32 142.5 142 54.9
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-32 142.5 143 54.5
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.5e-32 142.5 143 53.8
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 3.2e-32 142.1 142 56.3
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 5.5e-32 141.4 137 53.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 5.5e-32 141.4 141 56.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 7.2e-32 141.0 162 52.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 9.3e-32 140.6 146 54.8
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 9.3e-32 140.6 139 55.4
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.2e-31 140.2 143 54.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.1e-31 139.4 143 55.2
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.7e-31 139.0 142 54.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.7e-31 139.0 144 53.5
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 2.7e-31 139.0 142 52.8
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.7e-31 139.0 141 54.6
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.7e-31 139.0 141 54.6
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.6e-31 138.7 148 54.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 3.6e-31 138.7 145 54.5
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 4.6e-31 138.3 144 53.5
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.1e-31 137.9 145 54.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 6.1e-31 137.9 145 53.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 7.9e-31 137.5 142 52.8
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 7.9e-31 137.5 142 52.1
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 7.9e-31 137.5 141 53.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.0e-30 137.1 141 53.2
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.0e-30 137.1 141 53.9
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.3e-30 136.7 144 53.5
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-30 136.7 141 53.9
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.3e-30 136.7 142 54.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.8e-30 136.3 142 57.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.9e-30 135.2 142 54.2
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 3.9e-30 135.2 143 53.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.9e-30 135.2 145 52.4
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 3.9e-30 135.2 140 55.7
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 5.1e-30 134.8 142 53.5
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.7e-30 134.4 145 53.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 6.7e-30 134.4 144 52.8
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.7e-30 134.0 137 51.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.1e-29 133.7 141 52.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.5e-29 132.5 147 51.7
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.5e-29 132.5 141 52.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.5e-29 132.5 141 53.9
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.5e-29 132.5 145 54.5
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.5e-29 132.5 152 50.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.3e-29 132.1 143 49.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.3e-29 132.1 143 53.1
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 4.3e-29 131.7 137 53.3
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.3e-29 131.7 137 53.3
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 5.7e-29 131.3 138 52.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 5.7e-29 131.3 134 50.7
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 7.4e-29 131.0 137 53.3
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.4e-29 131.0 148 51.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 9.7e-29 130.6 142 52.1
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.6e-28 129.8 142 51.4
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.2e-28 129.4 123 58.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.2e-28 129.4 141 52.5
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 3.7e-28 128.6 141 52.5
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 6.3e-28 127.9 142 50.7
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 8.2e-28 127.5 142 50.0
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 8.2e-28 127.5 140 50.7
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-27 127.1 141 51.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.1e-27 127.1 142 50.0
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.1e-27 127.1 142 51.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.4e-27 126.7 147 51.0
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.4e-27 125.9 142 52.8
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.4e-27 125.9 141 50.4
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.1e-27 125.6 137 48.2
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 4.1e-27 125.2 142 50.7
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 5.3e-27 124.8 143 48.3
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.9e-27 124.4 142 52.8
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 9.1e-27 124.0 147 50.3
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 9.1e-27 124.0 142 51.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.2e-26 123.6 142 52.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.2e-26 123.6 142 48.6
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.5e-26 123.2 144 49.3
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-26 123.2 144 53.5
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.0e-26 122.9 141 51.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.0e-26 122.9 122 57.4
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.6e-26 122.5 147 47.6
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 7.7e-26 120.9 160 45.6
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 7.7e-26 120.9 137 47.4
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.9e-25 119.0 138 50.0
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 8.5e-25 117.5 122 54.9
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 8.5e-25 117.5 120 50.8
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.9e-24 116.3 119 53.8
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.2e-24 115.2 143 47.6
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.5e-24 114.8 139 50.4
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 2.7e-23 112.5 120 51.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.4e-22 110.2 137 46.0
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 5.1e-22 108.2 137 44.5
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.8e-20 101.7 120 55.0
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 6.3e-20 101.3 142 41.5
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-19 100.5 119 52.9
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 4.1e-19 98.6 136 43.4
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-18 96.7 86 55.8
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.6e-18 95.9 119 49.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 3.4e-18 95.5 110 51.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-17 94.0 119 52.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 8.5e-17 90.9 129 40.3
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.3e-14 82.8 104 43.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.2e-14 81.6 85 56.5
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 8.8e-14 80.9 106 44.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.7e-09 66.6 66 43.9
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.5e-09 64.7 45 60.0
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.9e-08 63.2 46 60.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 7.2e-08 61.2 62 54.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 8.8e-06 54.3 51 52.9


User provided reference genes

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