Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 2368.2 1117 100.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1817.4 1096 74.5
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1815.0 1115 73.5
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1809.7 1115 73.5
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1795.8 1114 73.2
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1790.4 1111 73.0
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1769.2 1112 72.0
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1768.8 1114 72.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1767.3 1122 71.8
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1764.2 1098 73.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1112 72.0
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1761.5 1112 71.6
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1761.5 1112 71.5
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1112 71.6
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1753.0 1111 71.4
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1750.7 1113 70.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1121 71.5
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1746.9 1115 71.6
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1741.9 1114 70.9
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1731.1 1110 70.5
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1730.7 1112 71.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1728.8 1112 70.6
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1725.3 1111 69.7
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1720.3 1115 71.1
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1719.9 1113 69.7
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1717.2 1113 70.7
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1716.8 1116 69.8
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1713.0 1113 70.4
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1708.3 1113 69.0
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1708.3 1114 70.2
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1707.6 1114 69.0
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1706.8 1113 69.8
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1706.0 1110 69.3
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1706.0 1114 68.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1116 69.4
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1116 69.5
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1701.0 1111 68.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1075 71.7
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1068 72.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1697.6 1107 69.0
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1695.6 1118 68.8
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1694.5 1117 69.1
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1687.9 1114 68.9
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1110 68.6
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1680.2 1111 67.9
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1225 64.4
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1671.4 1096 68.2
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1669.8 1111 68.2
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1669.1 1114 69.5
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1664.4 1110 68.6
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1662.1 1103 68.1
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1661.0 1110 67.1
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1660.2 1125 66.7
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1659.0 1110 67.7
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1658.3 1105 68.0
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1658.3 1071 70.4
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1110 67.2
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1110 67.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1657.1 1097 69.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1656.7 1126 67.9
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1655.2 1111 67.1
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1654.4 1114 67.5
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1110 67.1
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1650.6 1114 67.6
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1648.6 1105 67.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1647.9 1113 67.4
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1645.9 1104 67.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1096 67.7
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1637.9 1110 67.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1069 69.3
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1626.3 1110 66.9
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1620.5 992 74.7
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1617.8 1080 68.3
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1615.5 1103 66.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1097 67.4
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1610.5 1095 67.2
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1120 65.8
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1599.3 1123 64.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1576.2 1128 64.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1565.8 1095 66.4
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1565.1 1131 63.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1546.9 1124 63.3
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1530.4 1117 63.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1483.0 1161 61.2
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1478.0 1000 67.3
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1478.0 1083 63.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1437.6 929 70.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1403.3 897 72.4
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1307.0 1133 53.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1288.5 1098 54.8
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1281.2 1038 58.8
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1280.8 1105 54.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1280.8 832 69.5
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1268.8 833 69.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1212.6 749 72.5
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1169.5 1120 50.1
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1162.9 739 70.5
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1151.7 761 69.1
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1089.3 666 73.7
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 2.5e-305 1052.4 1137 47.1
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 4.3e-297 1025.0 691 68.0
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 6.9e-255 884.8 676 63.0
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.5e-244 850.5 499 77.6
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.6e-217 760.0 518 66.8
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 6.3e-216 755.4 518 66.8
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.0e-214 750.4 568 60.2
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.7e-176 624.4 1515 31.0
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.8e-146 524.6 600 45.8
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 5.5e-143 513.1 384 62.2
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.6e-129 468.4 283 76.3
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 9.4e-111 406.0 272 71.0
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.4e-109 402.1 671 36.2
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.5e-108 398.7 241 73.9
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 2.6e-108 397.9 827 32.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 5.2e-85 320.5 174 83.9
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.4e-84 317.8 197 71.1
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.9e-79 302.0 200 69.0
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.6e-78 298.9 261 55.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.8e-77 295.4 208 65.4
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-64 252.7 168 65.5
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 3.1e-61 241.5 165 68.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.7e-56 223.8 209 51.7
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.3e-55 221.1 130 72.3
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.2e-41 176.4 121 64.5
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.5e-39 168.7 192 45.8
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 9.6e-39 166.8 106 67.0
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 5.9e-36 157.5 138 52.2
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 6.5e-35 154.1 171 48.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.9e-31 142.5 138 50.0
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.5e-31 142.1 182 42.9
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.3e-31 141.7 75 78.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-31 141.4 134 50.7
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.5e-28 132.9 105 50.5
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 3.4e-28 131.7 83 71.1
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.0e-27 130.2 85 64.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.1e-26 126.7 132 48.5
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.2e-26 125.2 141 48.2
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 5.7e-23 114.4 96 54.2
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.1e-21 108.2 66 68.2
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 5.9e-20 104.4 118 48.3
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 9.4e-18 97.1 53 81.1
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.1e-17 95.9 100 50.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 8.8e-16 90.5 100 44.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 2.0e-15 89.4 100 44.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 4.8e-14 84.7 75 49.3
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 2.4e-13 82.4 44 72.7
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.1e-13 82.0 78 51.3
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.6e-12 79.7 44 72.7
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.0e-12 79.3 136 37.5
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 1.0e-11 77.0 384 23.7
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.3e-11 76.6 44 68.2
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 4.7e-09 68.2 47 57.4
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 3.0e-08 65.5 44 68.2
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 6.7e-08 64.3 58 51.7
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 6.7e-08 64.3 94 38.3
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 1.5e-07 63.2 37 73.0
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 1.5e-07 63.2 43 65.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-07 63.2 44 63.6
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 1.5e-07 63.2 38 71.1
Lsat_1_v5_gn_4_164861 Lactuca sativa HOM05D001159 ORTHO05D001712 4.4e-07 61.6 36 72.2
Lsat_1_v5_gn_8_57801 Lactuca sativa HOM05D002290 ORTHO05D017063 5.7e-07 61.2 37 73.0
Lsat_1_v5_gn_1_91120 Lactuca sativa HOM05D002740 ORTHO05D003126 7.5e-07 60.8 35 74.3
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 7.5e-07 60.8 36 72.2
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 9.7e-07 60.5 36 72.2
Lsat_1_v5_gn_2_136400 Lactuca sativa HOM05D001315 ORTHO05D004199 8.2e-06 57.4 34 73.5
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 8.2e-06 57.4 45 57.8


User provided reference genes

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