Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 8.9e-273 943.0 464 100.0
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 6.9e-225 783.9 464 81.5
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.0e-223 780.0 464 81.0
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.5e-219 766.1 459 80.0
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.5e-219 765.4 464 78.9
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 3.7e-218 761.5 464 80.4
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 3.7e-218 761.5 469 80.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.2e-218 760.4 461 79.2
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.2e-216 756.5 462 78.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.5e-216 756.1 464 78.2
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.0e-216 755.7 458 78.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 7.7e-216 753.8 463 78.2
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.3e-215 753.1 466 78.5
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.3e-215 753.1 458 78.8
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.9e-215 751.9 460 78.5
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 9.4e-214 746.9 465 77.2
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 9.4e-214 746.9 454 79.1
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-213 746.1 464 78.0
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 4.7e-213 744.6 455 78.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 6.1e-213 744.2 461 77.9
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.9e-213 743.8 460 77.4
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.9e-212 741.5 458 78.2
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 5.1e-212 741.1 460 78.0
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 7.4e-211 737.3 460 78.0
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 7.4e-211 737.3 460 78.0
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 9.7e-211 736.9 462 76.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.3e-210 736.5 453 77.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 1.7e-210 736.1 424 82.1
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.7e-210 736.1 489 73.6
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.7e-210 736.1 460 78.0
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 2.8e-210 735.3 460 77.2
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 3.7e-210 734.9 462 77.1
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.4e-209 733.0 458 77.1
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-209 733.0 460 74.1
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 5.3e-209 731.1 462 76.4
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 7.0e-209 730.7 436 79.4
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.2e-208 729.9 458 77.3
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.5e-208 729.6 456 77.9
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 5.9e-208 727.6 452 77.9
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 5.9e-208 727.6 453 76.6
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.7e-208 727.2 458 77.1
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 2.9e-207 725.3 492 73.6
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 3.8e-207 724.9 481 74.2
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.8e-207 724.9 462 74.9
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.5e-207 724.2 458 75.5
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.5e-207 724.2 449 76.6
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.9e-206 722.6 462 76.0
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.2e-206 721.8 460 76.3
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 4.2e-206 721.5 495 71.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 7.2e-206 720.7 457 75.3
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 7.2e-206 720.7 463 76.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 9.4e-206 720.3 464 75.4
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.2e-205 719.9 506 70.2
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 456 76.1
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 463 75.8
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 2.7e-205 718.8 471 74.7
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.4e-204 716.5 480 73.3
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 2.3e-204 715.7 458 73.1
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 4.0e-204 714.9 456 74.6
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 4.0e-204 714.9 459 75.4
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 5.2e-204 714.5 464 74.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.1e-203 713.4 454 74.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.0e-203 712.6 463 73.9
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 3.3e-203 711.8 457 74.6
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 4.4e-203 711.4 452 75.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.7e-203 711.1 472 73.3
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 7.4e-203 710.7 476 70.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 1.7e-202 709.5 458 72.3
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 3.7e-202 708.4 466 74.5
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 6.3e-202 707.6 453 74.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 6.3e-202 707.6 457 74.4
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.1e-201 706.8 458 76.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 3.1e-201 705.3 461 74.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 3.1e-201 705.3 426 79.1
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.3e-201 704.5 459 74.7
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 5.3e-201 704.5 457 73.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 9.1e-201 703.7 461 73.5
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.0e-200 702.6 457 73.5
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 2.6e-200 702.2 606 60.7
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 4.5e-200 701.4 461 73.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 4.5e-200 701.4 509 69.2
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.7e-199 699.5 461 72.7
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.2e-199 699.1 443 74.9
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.5e-198 695.7 544 65.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 3.2e-198 695.3 461 72.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 2.1e-197 692.6 436 75.5
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 8.0e-197 690.6 462 72.1
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 2.3e-196 689.1 458 73.4
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 3.0e-196 688.7 451 73.4
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.4e-195 685.3 462 72.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.1e-193 678.7 457 71.8
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 3.1e-193 678.7 442 74.4
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.9e-191 672.2 444 73.4
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 7.5e-187 657.5 460 68.5
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.1e-185 653.7 454 68.3
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.0e-180 637.1 424 70.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 2.9e-178 629.0 382 79.1
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 5.2e-172 608.2 465 63.0
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 7.5e-171 604.4 383 74.9
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 6.4e-170 601.3 379 75.7
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.6e-168 596.7 362 79.6
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 9.5e-166 587.4 362 78.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.2e-161 572.4 398 71.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 5.8e-155 551.6 456 61.2
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 3.2e-153 545.8 469 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.0e-151 540.8 436 61.5
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.3e-151 540.4 441 60.1
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 8.6e-151 537.7 453 59.4
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.6e-141 506.9 425 60.0
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 7.6e-139 498.0 281 82.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 4.3e-134 482.3 374 65.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 5.3e-132 475.3 443 55.8
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 7.9e-128 461.5 457 54.3
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 2.1e-125 453.4 284 75.7
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 4.0e-124 449.1 292 72.3
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 7.6e-115 418.3 249 73.9
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 5.0e-106 389.0 531 42.7
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 3.3e-102 376.3 254 71.3
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 2.5e-97 360.1 430 45.3
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 5.7e-94 349.0 507 41.2
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.2e-91 341.3 249 70.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.0e-87 328.2 455 39.6
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.5e-81 305.8 242 65.3
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 5.5e-81 305.8 249 64.3
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.5e-73 281.2 162 78.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 1.8e-71 274.2 239 59.0
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 4.3e-65 253.1 202 65.3
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.5e-62 244.6 182 66.5
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.9e-61 239.6 202 60.9
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.4e-61 239.2 151 74.8
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.9e-57 227.6 239 52.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.2e-56 224.9 139 79.1
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 3.7e-45 186.8 119 73.1
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-43 181.4 111 82.0
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.2e-40 171.8 339 34.8
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.7e-40 169.9 114 71.9
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.8e-39 166.0 106 77.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 6.8e-39 166.0 102 81.4
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.2e-36 157.1 106 73.6
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.3e-34 151.0 110 65.5
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.3e-34 151.0 97 71.1
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.8e-31 141.4 90 75.6
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.8e-31 141.4 92 68.5
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.4e-20 105.1 110 51.8
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 3.2e-20 104.0 71 71.8
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 3.2e-20 104.0 71 71.8
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 3.2e-20 104.0 71 71.8
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 8.7e-18 95.9 66 69.7
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.1e-17 95.5 97 49.5
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 5.6e-17 93.2 68 67.6
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 4.5e-14 83.6 44 88.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 6.4e-13 79.7 437 24.9
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.6e-11 73.6 49 75.5
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 5.1e-10 70.1 41 78.0
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.5e-09 67.8 43 74.4
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.5e-09 67.8 51 64.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 3.3e-09 67.4 235 28.1
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.3e-09 67.4 235 28.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 3.3e-09 67.4 235 28.1
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 4.3e-09 67.0 70 52.9
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.8e-08 64.3 39 79.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 2.8e-08 64.3 39 79.5
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.8e-08 63.5 233 28.8
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 4.8e-08 63.5 235 27.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 6.2e-08 63.2 235 28.1
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 6.2e-08 63.2 264 29.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 8.2e-08 62.8 39 76.9
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.1e-07 62.4 38 73.7
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.5e-06 58.5 233 27.5
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 2.0e-06 58.2 52 61.5
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.6e-06 57.8 230 27.4
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 5.8e-06 56.6 233 27.5
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 7.6e-06 56.2 233 27.0


User provided reference genes

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