Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.9e-194 681.8 361 100.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 5.7e-134 481.5 359 71.3
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.7e-130 469.9 359 70.2
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.5e-129 464.9 364 69.2
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.5e-129 464.9 360 70.0
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 7.2e-129 464.5 366 66.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 8.0e-128 461.1 359 69.4
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.0e-127 460.7 362 68.2
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.3e-127 459.5 363 68.6
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 4.0e-127 458.8 366 67.2
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.2e-126 457.2 365 67.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.0e-126 456.4 363 67.5
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 5.7e-126 454.9 365 67.7
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 2.2e-125 453.0 361 68.1
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-124 450.7 381 65.6
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.4e-124 450.3 358 67.9
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.8e-124 449.9 365 66.6
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.1e-124 448.7 369 67.8
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.1e-124 448.7 366 66.9
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.1e-124 448.7 380 64.7
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 7.0e-124 448.0 382 67.0
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 7.7e-123 444.5 384 64.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 1.0e-122 444.1 382 63.6
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.3e-122 443.7 361 65.9
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.7e-122 443.4 357 66.7
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.8e-122 442.2 365 66.0
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 6.6e-122 441.4 361 67.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.1e-121 440.7 366 66.7
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.5e-121 440.3 359 66.3
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 5.6e-121 438.3 366 65.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.4e-119 433.7 365 65.2
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.3e-119 433.0 367 65.9
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 5.2e-119 431.8 356 66.6
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 5.2e-119 431.8 354 64.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 6.8e-119 431.4 354 65.8
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.0e-118 429.9 356 66.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.9e-117 426.0 361 64.3
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.1e-116 424.1 371 62.8
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.1e-116 424.1 365 64.7
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.4e-116 423.7 361 62.0
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.4e-116 423.7 362 64.1
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.4e-116 422.9 364 62.9
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.4e-116 422.9 364 62.9
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.4e-116 421.8 362 61.6
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 7.0e-116 421.4 362 63.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.2e-115 420.6 362 62.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.2e-115 420.6 354 65.0
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.0e-115 419.9 362 62.7
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.0e-115 419.9 360 63.3
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.7e-115 419.5 362 62.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.6e-115 418.7 367 64.3
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.3e-114 417.2 339 67.8
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 3.0e-114 416.0 364 62.9
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 6.6e-114 414.8 370 63.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 6.6e-114 414.8 378 60.8
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 8.6e-114 414.5 378 61.1
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-113 414.1 360 62.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.1e-113 414.1 374 63.4
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.5e-113 413.7 367 63.5
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.5e-113 412.9 367 63.5
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.3e-113 412.5 356 62.6
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 4.3e-113 412.1 361 62.6
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 4.3e-113 412.1 369 62.9
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.1e-112 409.8 358 63.1
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 4.0e-111 405.6 370 61.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 8.9e-111 404.4 365 61.6
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.2e-110 404.1 360 62.5
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-110 403.7 364 61.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.4e-110 402.5 395 58.7
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.7e-109 400.2 362 61.6
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.2e-109 399.8 365 60.5
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.9e-109 398.7 367 60.5
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 6.0e-107 391.7 430 54.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.9e-106 389.0 365 59.7
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 5.6e-105 385.2 362 61.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 3.6e-104 382.5 368 60.6
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 8.1e-104 381.3 380 56.6
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.4e-103 380.6 374 59.6
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 5.2e-103 378.6 365 60.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.8e-103 378.3 366 59.3
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 8.3e-101 371.3 362 58.6
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.1e-100 368.2 343 60.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.0e-98 364.4 359 57.7
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.5e-97 360.5 364 56.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.5e-97 359.8 359 57.7
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.1e-96 356.7 361 56.5
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.6e-96 355.9 361 56.0
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 4.7e-96 355.5 384 52.9
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.2e-96 355.1 379 54.4
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 8.1e-96 354.8 357 56.9
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.4e-95 354.0 363 56.2
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.5e-94 350.5 371 54.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 2.0e-94 350.1 366 55.2
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.4e-94 349.4 370 56.8
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.8e-94 348.6 363 55.6
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 7.6e-94 348.2 383 54.0
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.4e-92 344.0 425 48.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.3e-90 336.7 368 56.5
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 8.6e-90 334.7 343 54.5
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 8.6e-90 334.7 369 52.3
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-88 330.9 380 51.8
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-88 330.5 380 51.1
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.6e-88 329.3 380 50.8
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.1e-87 327.8 356 53.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.5e-86 323.9 377 52.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.0e-86 323.6 364 53.3
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 4.3e-81 305.8 380 48.4
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 7.3e-81 305.1 380 48.4
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.8e-80 303.1 375 49.1
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-79 299.7 375 49.1
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-79 299.7 375 48.3
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 3.1e-79 299.7 375 48.3
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.8e-77 292.7 371 48.0
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.8e-71 273.9 308 52.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 9.9e-70 268.1 395 41.5
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 7.1e-68 261.9 243 61.3
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 6.0e-67 258.8 240 60.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.6e-65 251.5 299 50.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 4.0e-63 246.1 353 45.0
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.2e-60 236.1 183 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.7e-59 233.4 349 41.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 5.0e-53 212.6 440 35.9
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.1e-52 211.5 327 41.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.5e-46 191.0 224 51.8
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.6e-43 181.0 364 36.3
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.5e-36 157.1 124 66.9
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.0e-34 151.8 119 65.5
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.7e-33 146.0 158 54.4
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.5e-20 104.8 416 24.8
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.3e-16 91.7 56 80.4
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.8e-16 89.7 100 50.0
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.4e-15 87.4 397 26.4
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.4e-15 87.4 56 75.0
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.1e-15 87.0 59 67.8
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 5.0e-13 79.7 250 28.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-11 75.1 118 40.7
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-09 67.8 64 57.8
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 2.8e-08 63.9 50 64.0
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.9e-08 63.2 59 61.0
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 6.3e-08 62.8 59 61.0
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-07 62.0 59 59.3


User provided reference genes

Program Settings