Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 0.0e+00 1466.4 777 100.0
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1131.3 783 77.0
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1127.9 785 76.1
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1121.7 805 74.0
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1118.2 782 75.4
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1114.8 748 77.1
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1112.4 748 77.0
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1104.7 770 76.2
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1104.0 768 75.1
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1101.3 746 77.7
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1095.9 785 74.4
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1088.6 783 73.7
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1087.0 783 73.7
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1087.0 778 74.3
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1082.8 778 73.4
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1082.4 779 74.2
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1081.2 785 72.7
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1080.9 777 73.1
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1080.1 785 73.6
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1078.9 783 73.3
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1076.6 772 74.4
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1075.8 711 78.2
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 4.8e-311 1070.8 757 74.5
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 4.4e-309 1064.3 780 72.3
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 1.3e-308 1062.8 807 70.8
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 1.7e-308 1062.4 782 72.3
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 1.7e-308 1062.4 761 73.1
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 1.1e-307 1059.7 774 72.1
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 4.6e-306 1054.3 751 73.9
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 4.6e-306 1054.3 767 71.3
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 1.1e-304 1049.7 781 71.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 4.3e-304 1047.7 702 76.8
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 1.3e-303 1046.2 762 73.0
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 2.1e-303 1045.4 785 71.2
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 6.2e-303 1043.9 725 74.6
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 8.1e-303 1043.5 778 70.3
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 3.1e-302 1041.6 780 71.0
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 1.2e-301 1039.6 749 72.2
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 5.8e-301 1037.3 762 71.7
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 1.3e-300 1036.2 755 71.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 2.9e-300 1035.0 750 72.0
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 6.4e-300 1033.9 770 71.6
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 2.4e-299 1031.9 772 70.9
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 4.2e-299 1031.2 780 70.1
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 4.2e-299 1031.2 781 70.7
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 9.3e-299 1030.0 761 72.8
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 2.7e-298 1028.5 703 75.2
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 1.1e-296 1023.1 745 72.3
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 2.5e-296 1021.9 763 71.8
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 5.6e-296 1020.8 781 70.6
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 3.1e-294 1015.0 794 69.8
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 2.9e-292 1008.4 815 68.0
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.4e-291 1006.1 771 70.7
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 5.5e-291 1004.2 780 68.5
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 6.0e-290 1000.7 764 70.4
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 7.9e-290 1000.3 780 68.6
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.3e-289 999.6 758 69.9
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 1.3e-289 999.6 728 71.2
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 3.0e-289 998.4 760 70.5
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 1.5e-288 996.1 781 69.0
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 1.9e-288 995.7 759 70.1
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 3.3e-288 995.0 761 69.1
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 4.3e-288 994.6 706 73.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 1.3e-287 993.0 730 70.4
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 6.2e-287 990.7 718 70.5
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 1.1e-286 989.9 702 72.9
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 5.3e-286 987.6 775 69.9
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 6.9e-286 987.3 711 71.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 1.2e-285 986.5 748 68.7
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 1.2e-285 986.5 702 72.8
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 2.0e-285 985.7 721 70.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 4.5e-285 984.6 749 68.5
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 4.5e-285 984.6 749 68.5
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 2.9e-284 981.9 721 69.8
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 4.9e-284 981.1 721 69.8
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 8.4e-284 980.3 721 69.6
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 8.4e-284 980.3 721 69.6
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 3.2e-283 978.4 781 66.2
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 4.2e-283 978.0 775 67.5
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 5.5e-283 977.6 785 65.6
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 7.1e-283 977.2 721 71.3
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 1.2e-282 976.5 814 64.3
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 2.7e-282 975.3 761 66.9
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 4.3e-280 968.0 795 66.3
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.6e-279 966.1 767 66.5
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 1.5e-277 959.5 724 69.5
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 1.5e-277 959.5 754 67.0
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 2.6e-277 958.7 774 66.8
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 6.5e-276 954.1 786 66.7
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 2.5e-275 952.2 782 66.2
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 4.2e-275 951.4 756 67.3
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 3.6e-274 948.3 735 67.5
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 7.4e-272 940.6 759 65.5
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 3.7e-271 938.3 700 70.1
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 9.4e-267 923.7 763 64.1
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 5.1e-265 917.9 748 67.8
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 2.2e-263 912.5 745 65.2
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 1.5e-261 906.4 776 62.9
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 5.0e-260 901.4 929 57.1
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 2.5e-251 872.5 726 65.6
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 1.0e-249 867.1 757 62.4
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 7.2e-243 844.3 733 60.8
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 7.5e-224 781.2 511 78.1
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 7.1e-206 721.5 785 53.4
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 7.1e-198 694.9 733 51.3
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 4.9e-191 672.2 737 49.8
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.5e-189 666.0 659 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.9e-182 643.7 796 45.7
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 5.6e-179 632.1 732 47.8
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 3.4e-176 622.9 687 49.3
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 6.1e-165 585.5 739 46.0
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 7.7e-160 568.5 548 59.9
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 9.7e-139 498.4 522 56.5
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.0e-119 435.3 361 63.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.7e-112 410.6 651 35.8
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 2.7e-96 357.5 709 35.5
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 6.4e-66 256.5 688 28.9
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 3.7e-61 240.7 602 29.1
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 6.9e-60 236.5 235 60.0
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 6.9e-60 236.5 235 60.0
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.1e-52 212.6 253 52.2
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 3.2e-49 201.1 187 55.1
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.3e-42 179.1 771 25.8
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 8.8e-39 166.4 108 81.5
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.5e-38 165.6 151 60.3
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 4.1e-36 157.5 116 67.2
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.8e-34 151.0 110 73.6
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.0e-34 150.6 110 73.6
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 4.8e-29 134.0 131 58.8
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 9.1e-28 129.8 98 71.4
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.6e-24 117.9 83 73.5
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.7e-24 117.5 71 84.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.4e-20 105.9 60 88.3
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.7e-19 101.7 61 80.3
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 1.7e-18 99.0 63 79.4
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.5e-17 95.1 64 75.0
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-16 92.8 66 72.7
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.4e-12 78.6 46 87.0
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.4e-12 78.6 42 95.2
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.4e-12 78.6 42 95.2
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 3.1e-12 78.2 65 61.5
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 2.9e-10 71.6 56 62.5
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-09 69.7 44 81.8
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 2.5e-09 68.6 81 54.3
Haze_19711 Corylus avellana HOM05D055146 ORTHO05D044793 4.7e-08 64.3 91 51.6
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 1.2e-06 59.7 137 26.3
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 2.0e-06 58.9 137 25.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.6e-06 58.5 157 25.5
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 2.6e-06 58.5 160 25.6
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 4.4e-06 57.8 137 25.5
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 5.7e-06 57.4 137 25.5
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 5.7e-06 57.4 137 25.5
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 5.7e-06 57.4 137 25.5
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 5.7e-06 57.4 137 25.5
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 5.7e-06 57.4 137 25.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 5.7e-06 57.4 171 25.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 9.8e-06 56.6 137 25.5
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 9.8e-06 56.6 137 25.5
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 9.8e-06 56.6 137 25.5
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 9.8e-06 56.6 171 25.7
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 9.8e-06 56.6 137 24.8


User provided reference genes

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