Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.1e-299 1031.6 509 100.0
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.6e-238 829.3 508 82.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 4.6e-238 827.8 507 81.3
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.3e-236 821.2 508 80.7
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 9.6e-236 820.1 502 80.9
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.6e-235 819.3 512 78.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.6e-235 818.1 509 78.6
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 6.2e-235 817.4 512 79.9
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.4e-234 816.2 508 80.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.0e-234 814.7 508 80.5
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.2e-234 814.3 508 80.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.9e-234 813.9 508 80.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.4e-233 811.6 508 80.1
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 4.4e-233 811.2 506 79.6
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 4.9e-232 807.7 519 78.6
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 8.4e-232 807.0 507 78.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.2e-231 805.1 505 79.2
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 4.2e-231 804.7 507 78.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 7.1e-231 803.9 512 78.9
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.6e-230 802.7 505 77.8
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.0e-229 798.5 505 78.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.5e-228 795.4 503 76.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.3e-228 794.7 506 78.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 4.3e-228 794.7 511 78.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.1e-227 792.3 516 76.9
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.8e-227 792.0 503 77.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.8e-227 792.0 482 81.1
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-226 789.6 529 75.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.3e-226 787.7 516 76.6
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.0e-225 785.8 513 76.0
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.6e-225 785.4 510 77.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 3.4e-225 785.0 500 77.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 7.6e-225 783.9 504 77.6
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 7.6e-225 783.9 516 76.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.9e-224 781.9 501 76.8
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 3.2e-223 778.5 483 79.1
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 7.1e-223 777.3 526 74.5
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 7.1e-223 777.3 507 75.9
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.9e-221 771.5 509 76.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 6.7e-221 770.8 509 75.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.1e-219 765.8 513 74.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 3.7e-219 765.0 504 75.2
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 8.1e-219 763.8 513 75.0
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 4.0e-218 761.5 524 73.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 6.9e-218 760.8 511 74.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.0e-218 760.4 517 74.9
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 9.0e-218 760.4 519 74.0
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.2e-217 760.0 510 74.3
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.6e-217 758.8 464 80.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.5e-217 758.1 512 75.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-216 756.1 508 75.8
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.8e-216 755.0 503 74.6
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.9e-216 754.6 511 72.8
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 6.4e-216 754.2 503 75.1
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.1e-215 753.4 512 74.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.2e-215 751.9 510 74.5
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 4.2e-215 751.5 501 74.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.5e-215 751.1 511 73.6
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 2.1e-214 749.2 514 74.9
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.6e-214 748.0 503 73.8
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.0e-214 747.7 503 73.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 6.0e-214 747.7 546 69.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.3e-213 745.7 501 73.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.0e-213 745.3 501 74.1
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.5e-212 742.3 507 72.8
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.8e-211 738.8 458 79.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.2e-211 737.6 509 72.7
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 3.1e-210 735.3 510 72.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 9.0e-210 733.8 494 73.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.5e-209 733.0 514 73.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.0e-209 732.6 506 73.1
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.8e-209 731.1 499 73.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 7.6e-209 730.7 511 72.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.3e-208 729.9 509 72.5
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-207 726.5 503 72.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.0e-206 721.1 541 68.8
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 7.9e-206 720.7 514 70.8
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.3e-205 719.9 500 70.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 6.7e-205 717.6 501 72.7
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 6.7e-205 717.6 501 72.7
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.6e-203 713.0 478 73.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.8e-203 712.2 497 71.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.4e-202 709.9 591 64.0
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.8e-202 709.5 431 81.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 9.0e-202 707.2 517 70.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.3e-197 692.6 503 72.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 4.3e-196 688.3 496 70.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.7e-196 688.0 510 68.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.7e-196 688.0 467 74.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 6.3e-195 684.5 467 74.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.0e-193 679.5 507 69.8
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.9e-192 675.6 516 67.2
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.1e-189 664.8 521 65.5
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 7.7e-185 651.0 507 66.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-182 643.3 417 78.7
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.4e-178 630.2 466 70.0
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.2e-176 622.9 522 62.6
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.4e-173 613.6 431 71.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.1e-170 602.4 521 61.2
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.3e-170 601.7 490 61.6
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.0e-169 599.7 294 99.3
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 8.5e-168 594.3 555 55.7
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 4.7e-166 588.6 383 77.3
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.8e-165 584.7 484 61.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.8e-165 584.7 493 61.1
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 5.9e-161 571.6 451 65.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-159 567.4 480 60.8
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.9e-159 566.6 364 78.8
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.5e-159 566.2 492 59.3
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.0e-157 559.3 364 77.2
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.6e-153 547.0 334 80.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.6e-150 535.8 353 76.8
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.6e-150 535.8 363 74.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.0e-149 534.3 540 53.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-149 534.3 475 58.7
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 6.8e-149 531.6 484 56.4
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 8.9e-149 531.2 392 69.4
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.7e-147 525.8 489 56.4
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.0e-136 491.1 494 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 3.7e-131 472.6 512 49.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.7e-131 472.6 336 72.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 9.2e-130 468.0 357 70.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.9e-124 448.0 409 60.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 2.4e-114 416.8 578 42.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-106 391.0 319 65.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-103 380.9 477 47.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 9.6e-103 378.3 365 60.5
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-88 331.6 291 60.5
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.6e-81 306.2 217 71.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-79 300.4 317 53.6
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-77 294.7 161 83.9
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.1e-77 293.1 246 61.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.7e-73 279.6 218 62.4
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.0e-72 276.9 395 40.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.7e-67 261.2 146 84.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.0e-63 247.7 144 81.2
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 9.1e-61 238.8 309 42.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.2e-59 234.2 140 79.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 7.2e-58 229.2 216 62.0
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.6e-52 211.5 330 39.4
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 5.9e-44 183.0 166 57.2
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.8e-37 161.4 193 49.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.0e-36 157.9 100 72.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-34 152.1 104 69.2
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.9e-27 127.1 336 29.8
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.0e-27 126.7 117 60.7
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 5.2e-24 116.7 68 77.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.9e-19 100.5 62 72.6
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 8.1e-17 92.8 65 67.7
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 9.9e-15 85.9 72 61.1
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.3e-11 74.7 45 73.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.6e-09 67.4 87 48.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 8.1e-09 66.2 38 78.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-07 62.4 46 58.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 9.9e-07 59.3 64 56.2
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 8.4e-06 56.2 44 52.3


User provided reference genes

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