Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1871 Cannabis sativa HOM05D004428 ORTHO05D006381 8.3e-277 956.4 494 100.0
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 1.7e-229 799.3 444 94.6
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 3.2e-188 662.1 456 76.3
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 7.7e-182 641.0 456 73.0
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 1.7e-181 639.8 456 73.0
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 2.9e-181 639.0 457 74.0
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 2.9e-181 639.0 460 75.7
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 2.9e-181 639.0 461 73.3
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 8.8e-178 627.5 454 72.0
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.6e-177 625.9 463 72.4
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 1.6e-174 616.7 458 71.6
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 2.3e-173 612.8 458 71.2
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 5.0e-173 611.7 456 70.8
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 8.6e-173 610.9 458 72.5
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.5e-172 609.4 457 72.4
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 3.6e-171 605.5 473 70.8
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 8.0e-171 604.4 458 71.4
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 8.0e-171 604.4 458 71.4
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 1.0e-170 604.0 459 70.6
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.4e-170 603.6 459 70.4
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 1.4e-170 603.6 478 69.7
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 1.4e-170 603.6 460 70.0
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 1.8e-170 603.2 459 71.9
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.2e-169 600.5 434 73.7
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.2e-169 600.5 459 70.2
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.0e-169 599.7 458 71.0
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.0e-169 599.7 459 69.9
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 3.4e-169 599.0 442 72.2
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 9.8e-169 597.4 458 70.5
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 9.8e-169 597.4 452 69.9
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 9.8e-169 597.4 456 71.5
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 3.7e-168 595.5 459 71.0
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 3.7e-168 595.5 467 67.2
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 6.3e-168 594.7 439 71.1
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 1.8e-167 593.2 457 68.9
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 4.1e-167 592.0 456 68.6
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.2e-166 590.5 460 69.8
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 2.7e-166 589.3 457 69.1
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 7.8e-166 587.8 454 68.1
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.0e-165 587.4 457 67.6
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 3.8e-165 585.5 453 67.5
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 3.3e-164 582.4 457 68.3
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 1.6e-163 580.1 480 64.8
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 2.8e-163 579.3 456 67.3
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 3.6e-163 578.9 454 67.6
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 1.0e-162 577.4 438 68.5
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 1.0e-162 577.4 454 67.4
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 1.4e-162 577.0 456 67.3
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 1.4e-162 577.0 459 67.3
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 2.3e-162 576.2 453 67.3
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 4.0e-162 575.5 455 67.5
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 1.2e-161 573.9 454 66.7
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 5.8e-161 571.6 458 65.7
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 1.3e-160 570.5 458 65.7
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 2.2e-160 569.7 438 67.6
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 3.7e-160 568.9 462 66.2
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 4.9e-160 568.5 457 65.2
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 6.4e-160 568.2 444 70.0
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.1e-159 567.4 456 65.1
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.1e-159 567.4 456 65.1
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 1.1e-159 567.4 439 65.8
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 1.4e-159 567.0 457 66.7
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 2.4e-159 566.2 460 65.2
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 1.7e-157 560.1 465 65.6
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 1.7e-157 560.1 453 66.4
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 3.9e-157 558.9 459 66.0
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 8.6e-157 557.8 456 68.6
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 1.5e-156 557.0 482 62.4
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 1.9e-156 556.6 463 62.9
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 1.9e-156 556.6 454 65.6
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 3.3e-156 555.8 482 61.4
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 9.5e-156 554.3 461 64.2
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 2.1e-155 553.1 456 63.8
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 2.1e-155 553.1 455 65.1
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 4.7e-155 552.0 454 65.4
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 1.1e-154 550.8 474 64.8
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 1.2e-153 547.4 438 66.2
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 1.5e-153 547.0 456 62.7
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 3.4e-153 545.8 438 65.8
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 7.5e-153 544.7 464 61.0
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 2.9e-152 542.7 455 64.8
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 3.7e-152 542.3 467 63.0
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 4.1e-151 538.9 438 64.2
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 5.4e-151 538.5 456 62.3
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 6.0e-150 535.0 455 65.1
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 3.0e-149 532.7 441 64.2
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 2.5e-148 529.6 455 63.3
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 9.5e-148 527.7 468 63.9
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 2.3e-146 523.1 438 64.6
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 8.9e-146 521.2 463 63.5
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 3.4e-145 519.2 473 60.7
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 9.9e-145 517.7 463 61.6
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 6.4e-144 515.0 438 63.5
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 8.3e-144 514.6 438 63.5
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 4.1e-143 512.3 438 63.5
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 2.1e-142 510.0 455 62.9
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 1.3e-141 507.3 462 60.6
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 1.5e-140 503.8 456 61.2
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 6.4e-136 488.4 457 60.2
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 4.1e-135 485.7 458 60.7
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 5.4e-135 485.3 550 53.8
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 1.0e-133 481.1 456 59.6
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 1.7e-133 480.3 439 59.5
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 8.1e-131 471.5 458 59.8
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 5.2e-130 468.8 452 56.4
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 7.6e-129 464.9 479 58.0
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 1.1e-127 461.1 460 56.5
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.4e-127 460.7 460 56.5
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 3.5e-126 456.1 440 56.4
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 8.1e-123 444.9 489 55.4
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 1.5e-121 440.7 455 55.4
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 7.6e-121 438.3 413 58.6
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 9.9e-121 438.0 344 66.0
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 2.7e-118 429.9 456 57.2
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 8.7e-117 424.9 463 52.5
PSO063G3671 Papaver somniferum HOM05D004428 ORTHO05D006381 2.3e-109 400.2 447 51.9
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 1.9e-108 397.1 431 53.8
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 1.3e-107 394.4 465 50.5
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 6.2e-107 392.1 465 50.5
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 8.2e-107 391.7 463 50.5
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 2.5e-103 380.2 394 53.6
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 1.9e-100 370.5 347 57.3
BcaB04g17057 Brassica carinata HOM05D004428 ORTHO05D006381 2.6e-76 290.4 245 60.8
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 4.1e-74 283.1 579 37.8
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 1.6e-73 281.2 414 42.0
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 4.5e-73 279.6 389 44.2
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 3.2e-71 273.5 466 39.7
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 9.7e-68 261.9 494 38.1
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 4.8e-67 259.6 440 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 7.0e-66 255.8 453 38.4
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 3.3e-55 220.3 371 42.0
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 4.7e-54 216.5 533 32.6
Dinv39586 Davidia involucrata HOM05D004428 ORTHO05D006381 1.7e-32 144.8 120 69.2
Aa31LG5G19870 Aethionema arabicum HOM05D004428 ORTHO05D017237 1.8e-29 134.8 118 64.4
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 1.8e-29 134.8 228 43.4
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 5.1e-24 116.7 476 27.3
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 8.1e-22 109.4 200 34.0
COL.COLO4_27852 Corchorus olitorius HOM05D000093 ORTHO05D002784 2.6e-20 104.4 167 44.9
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 1.3e-16 92.0 473 24.7
Sp5g18200 Schrenkiella parvula HOM05D007948 ORTHO05D006374 1.1e-10 72.4 97 48.5
DCAR_022543 Daucus carota HOM05D000819 ORTHO05D000661 1.6e-09 68.6 44 61.4
Sp7g16520 Schrenkiella parvula HOM05D002230 ORTHO05D002441 1.0e-08 65.9 308 24.0
Cfa025316 Carpinus fangiana HOM05D004428 ORTHO05D006381 2.3e-08 64.7 313 21.4
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 1.5e-07 62.0 69 52.2
PRCOL_00006812 Prasinoderma coloniale HOM05D002230 ORTHO05D002441 1.9e-07 61.6 305 24.6
PSO297G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 2.5e-07 61.2 254 25.2
PSO413G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 2.5e-07 61.2 254 25.2
PSO421G0277 Papaver somniferum HOM05D002230 ORTHO05D002441 2.5e-07 61.2 254 25.2
AUR62021045 Chenopodium quinoa HOM05D002230 ORTHO05D002441 3.3e-07 60.8 229 26.6
AagrBONN_evm.TU.Sc2ySwM_369.529 Anthoceros agrestis HOM05D002230 ORTHO05D002441 7.3e-07 59.7 299 23.7
HPP92_015122 Vanilla planifolia HOM05D002230 ORTHO05D002441 7.3e-07 59.7 297 23.2
Haze_26692 Corylus avellana HOM05D002230 ORTHO05D002441 9.6e-07 59.3 291 24.1
PSO017G5327 Papaver somniferum HOM05D002230 ORTHO05D002441 9.6e-07 59.3 295 22.4
AL8G24760 Arabidopsis lyrata HOM05D004428 ORTHO05D017237 1.3e-06 58.9 55 63.6
EL10Ac3g07289 Beta vulgaris HOM05D002230 ORTHO05D002441 1.3e-06 58.9 226 24.3
Sabra17G0004300 Salix brachista HOM05D002230 ORTHO05D002441 1.3e-06 58.9 222 25.2
Sed0010811 Sechium edule HOM05D002230 ORTHO05D002441 1.6e-06 58.5 297 24.6
arahy.Tifrunner.gnm1.ann1.W5M1I0 Arachis hypogaea HOM05D002230 ORTHO05D002441 2.1e-06 58.2 295 25.1
arahy.Tifrunner.gnm1.ann1.XT66D5 Arachis hypogaea HOM05D002230 ORTHO05D002441 2.1e-06 58.2 295 25.1
ClCG09G009700 Citrullus lanatus HOM05D002230 ORTHO05D002441 2.1e-06 58.2 297 23.6
Sabra17G0003200 Salix brachista HOM05D002230 ORTHO05D002441 2.1e-06 58.2 226 24.8
Sabra17G0004700 Salix brachista HOM05D002230 ORTHO05D002441 2.1e-06 58.2 226 24.3
Glyma.12G049700 Glycine max HOM05D002230 ORTHO05D002441 3.6e-06 57.4 295 25.1
Sed0001302 Sechium edule HOM05D002230 ORTHO05D002441 3.6e-06 57.4 297 23.9
ClCG09G010650 Citrullus lanatus HOM05D002230 ORTHO05D002441 4.8e-06 57.0 297 22.9
CsaV3_7G021630 Cucumis sativus L. HOM05D002230 ORTHO05D002441 4.8e-06 57.0 297 22.9
MCO01G316 Micromonas commoda HOM05D002230 ORTHO05D002441 4.8e-06 57.0 304 23.0
MELO3C013185.2 Cucumis melo HOM05D002230 ORTHO05D002441 6.2e-06 56.6 297 22.9
Lj1g0018031 Lotus japonicus HOM05D002230 ORTHO05D002441 6.2e-06 56.6 297 23.6
MBI04_g09487_MAGBIO Magnolia biondii HOM05D002230 ORTHO05D002441 6.2e-06 56.6 308 22.7
Glyma.11G125100 Glycine max HOM05D002230 ORTHO05D002441 8.1e-06 56.2 295 24.7
Os03g0333100 Oryza sativa ssp. japonica HOM05D002230 ORTHO05D002441 8.1e-06 56.2 300 26.0


User provided reference genes

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