Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 2.0e-146 522.3 252 100.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 9.5e-136 486.9 252 92.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 4.0e-134 481.5 252 90.9
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 8.9e-134 480.3 252 90.1
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.0e-133 479.2 252 91.7
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.4e-133 478.4 255 90.2
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 4.4e-133 478.0 252 90.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 5.8e-133 477.6 252 90.1
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.5e-133 477.2 254 91.3
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 7.5e-133 477.2 254 91.3
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 7.5e-133 477.2 252 90.5
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 1.3e-132 476.5 252 89.7
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 1.7e-132 476.1 252 89.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 4.9e-132 474.6 252 89.7
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 4.9e-132 474.6 252 88.9
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 6.4e-132 474.2 252 89.3
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.1e-131 473.4 252 89.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.4e-131 473.0 252 89.3
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.0
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 2.4e-131 472.2 256 90.2
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 3.2e-131 471.9 256 90.2
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 4.1e-131 471.5 255 89.4
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.4e-131 471.1 256 90.2
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.2e-130 469.9 252 87.7
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.2e-130 469.9 254 90.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.2e-130 469.9 256 89.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.6e-130 469.5 253 90.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.6e-130 469.5 254 89.4
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.6e-130 469.5 256 89.8
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.2
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 7.8e-130 467.2 256 89.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.0e-129 466.8 253 90.1
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.0e-129 466.8 253 90.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.0e-129 466.8 253 88.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-129 466.5 256 89.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 88.6
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.7e-129 466.1 255 89.4
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.7e-129 466.1 256 89.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.7e-129 466.1 254 89.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.7e-129 466.1 255 88.6
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.3e-129 465.7 256 89.1
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.3e-129 465.7 255 88.2
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 3.0e-129 465.3 253 90.1
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.8
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 88.2
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 5.0e-129 464.5 255 89.0
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 6.6e-129 464.2 255 88.2
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 6.6e-129 464.2 256 87.9
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 6.6e-129 464.2 255 88.6
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 8.6e-129 463.8 255 88.2
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 8.6e-129 463.8 252 90.1
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 89.0
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.5e-128 463.0 256 87.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.5e-128 463.0 257 87.9
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 2.5e-128 462.2 253 89.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 87.8
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 86.7
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 88.2
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.5e-128 462.2 256 88.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 87.8
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 9.5e-128 460.3 255 87.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.2e-127 459.9 255 87.5
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 2.1e-127 459.1 253 89.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 87.1
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 2.8e-127 458.8 249 90.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 2.8e-127 458.8 249 90.0
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.8e-127 458.8 253 89.3
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.8e-127 458.8 255 87.5
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.8e-127 458.8 256 85.9
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 3.6e-127 458.4 255 87.5
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.2e-127 457.6 253 87.7
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 8.1e-127 457.2 255 87.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 8.1e-127 457.2 254 87.0
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.1e-126 456.8 254 88.2
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 85.9
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 85.9
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 85.9
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 4.0e-126 454.9 252 86.9
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.2e-126 454.5 255 85.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 85.5
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 3.4e-125 451.8 256 85.2
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 5.8e-125 451.1 253 85.8
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 85.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.2e-124 449.1 261 85.8
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 84.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 85.0
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 85.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 3.7e-124 448.4 253 85.0
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 4.9e-124 448.0 254 83.5
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 6.4e-124 447.6 255 84.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.1e-123 446.8 252 85.7
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.1e-123 446.8 253 86.6
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.4e-123 446.4 254 84.3
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.2e-123 445.3 253 85.8
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 4.1e-123 444.9 255 85.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.6e-122 443.0 306 74.2
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.0e-122 441.0 255 84.3
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.8e-122 440.7 255 82.7
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.3e-121 439.9 255 82.4
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.7e-121 439.5 255 83.9
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.0e-121 438.7 237 88.6
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 83.9
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 82.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.6e-121 437.6 255 82.4
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 257 80.9
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 7.3e-120 434.1 257 80.2
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-119 432.2 255 82.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.2e-117 426.8 257 78.6
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.5e-117 426.4 283 75.6
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.6e-117 424.1 239 87.4
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 9.2e-115 417.2 232 81.9
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.1e-114 416.0 260 74.6
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.1e-112 410.2 252 82.1
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.9e-112 409.5 294 73.5
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 4.0e-110 401.7 259 79.2
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 5.8e-109 397.9 242 78.5
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 6.4e-108 394.4 219 86.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 2.3e-105 386.0 229 77.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 3.9e-105 385.2 249 71.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.9e-104 382.9 233 75.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 5.6e-104 381.3 260 74.2
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.8e-102 376.3 260 71.9
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.1e-102 375.6 232 74.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.1e-102 375.6 232 74.6
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 2.0e-101 372.9 319 63.0
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.2e-100 369.4 260 71.9
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 3.5e-98 362.1 255 72.9
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 2.3e-97 359.4 199 84.4
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.1e-97 358.2 239 77.8
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 5.3e-94 348.2 257 65.8
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.7e-92 343.2 257 64.6
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.1e-91 340.5 250 71.2
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 7.6e-85 317.8 160 93.8
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 3.2e-83 312.4 282 63.1
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-82 310.5 161 91.3
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 4.6e-82 308.5 162 88.3
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 3.0e-81 305.8 252 58.7
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 6.7e-81 304.7 168 88.1
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.4e-78 297.0 201 73.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.2e-74 283.9 168 82.1
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 4.8e-71 271.9 162 82.1
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.5e-69 266.9 232 52.6
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.1e-66 255.0 267 55.8
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 2.0e-61 240.0 135 85.2
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 8.8e-57 224.6 117 89.7
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.7e-55 220.3 115 92.2
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.2e-48 197.6 216 44.4
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.7e-47 193.7 101 92.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.8e-46 190.3 121 76.0
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.5e-45 186.0 100 89.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.3e-44 184.1 235 44.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.2e-43 179.1 165 59.4
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 9.8e-40 167.9 83 91.6
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 5.4e-38 162.2 84 84.5
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.0e-36 157.9 100 79.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.7e-36 157.1 89 82.0
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.6e-36 155.2 83 85.5
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.6e-34 149.4 89 78.7
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.0e-34 148.3 89 77.5
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.0e-33 146.4 75 88.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.2e-32 144.4 89 76.4
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.5e-32 144.1 97 74.2
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 8.3e-31 138.3 81 80.2
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-30 137.5 81 80.2
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 5.4e-30 135.6 84 79.8
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.7e-29 133.3 81 77.8
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-29 132.5 75 81.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-29 132.5 75 81.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-29 132.5 75 81.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-29 132.5 75 81.3
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.7e-28 130.6 75 80.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.6e-27 125.6 75 77.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-26 123.2 71 80.3
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 8.0e-26 121.7 82 76.8
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.4e-25 120.9 76 76.3
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 9.5e-11 71.6 39 84.6
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 4.7e-10 69.3 55 69.1
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 7.1e-06 55.5 30 83.3


User provided reference genes

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