Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 9.0e-223 776.5 377 100.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 4.2e-220 767.7 377 98.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.2e-147 526.9 370 71.4
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.4e-145 518.5 388 67.3
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 3.7e-144 515.4 351 71.5
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 4.1e-143 511.9 385 68.3
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 2.0e-142 509.6 364 69.5
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 6.6e-141 504.6 360 70.0
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.6e-140 501.5 367 67.8
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 7.3e-140 501.1 372 67.5
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.5e-140 500.7 372 67.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.6e-139 500.0 342 71.1
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 2.1e-139 499.6 391 65.2
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 3.6e-139 498.8 374 65.2
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.2e-139 498.0 377 66.8
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 6.2e-139 498.0 378 66.1
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.3e-138 496.1 366 67.5
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.6e-137 492.7 375 64.8
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 5.8e-137 491.5 330 70.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.3e-136 490.3 377 66.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 4.9e-136 488.4 372 65.9
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 7.1e-135 484.6 367 65.7
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.2e-134 483.8 362 65.7
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.6e-134 483.4 367 65.4
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 2.1e-134 483.0 327 69.7
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.1e-134 483.0 355 66.2
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 2.7e-134 482.6 380 64.5
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 6.0e-134 481.5 352 67.6
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 6.0e-134 481.5 352 66.5
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 7.8e-134 481.1 324 69.8
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 6.6e-133 478.0 391 61.9
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 6.6e-133 478.0 384 61.7
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 8.6e-133 477.6 326 70.2
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.1e-132 477.2 384 62.5
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.9e-132 476.5 352 67.3
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 2.5e-132 476.1 329 69.6
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 2.1e-131 473.0 389 60.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 4.7e-131 471.9 325 68.9
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.4e-130 470.3 348 67.0
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.4e-130 470.3 360 65.3
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.3e-130 469.5 358 64.5
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.8e-130 468.0 343 66.2
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 8.9e-130 467.6 389 64.5
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 8.9e-130 467.6 360 65.8
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.5e-129 466.8 325 67.1
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.5e-129 466.8 339 67.6
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 5.8e-129 464.9 377 63.1
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.9e-129 464.2 325 68.3
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.9e-129 464.2 325 68.3
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.3e-128 463.8 327 67.6
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 1.7e-128 463.4 343 66.5
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.7e-128 463.4 359 64.6
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 2.9e-128 462.6 326 68.4
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.9e-128 462.6 373 62.7
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.1e-127 460.7 346 65.0
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.9e-127 459.9 373 61.4
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 3.2e-127 459.1 364 63.2
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 3.2e-127 459.1 369 61.5
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 4.1e-127 458.8 334 67.7
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 5.4e-127 458.4 387 61.0
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 7.1e-127 458.0 333 67.6
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 2.1e-126 456.4 373 61.1
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 7.8e-126 454.5 399 58.1
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.0e-125 454.1 336 65.5
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 8.6e-125 451.1 342 66.7
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.1e-124 450.7 388 58.8
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.1e-124 450.7 398 59.5
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.5e-124 450.3 346 65.3
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.9e-124 449.9 325 65.8
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 2.5e-124 449.5 367 60.5
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 9.6e-124 447.6 361 63.4
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 2.8e-123 446.0 358 62.0
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.8e-123 446.0 350 65.1
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 6.2e-123 444.9 308 69.2
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 4.0e-122 442.2 368 60.9
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 2.6e-121 439.5 340 66.2
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 3.4e-121 439.1 321 64.5
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.2e-120 436.4 343 63.3
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.9e-120 436.0 306 69.3
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.4e-119 433.0 364 59.1
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 3.2e-119 432.6 351 61.0
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 4.2e-119 432.2 344 62.5
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 7.1e-119 431.4 381 59.1
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 2.7e-118 429.5 343 62.4
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 6.0e-118 428.3 342 60.5
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.3e-117 427.2 355 59.2
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.3e-117 427.2 324 63.9
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.3e-115 420.6 362 59.4
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 1.6e-115 420.2 351 62.1
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.4e-114 417.2 309 66.7
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 4.0e-114 415.6 367 58.3
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 3.4e-113 412.5 279 71.0
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 4.4e-113 412.1 278 71.9
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.7e-112 410.2 275 72.0
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 2.2e-112 409.8 323 63.2
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.1e-111 407.5 367 57.2
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 1.4e-111 407.1 276 70.7
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 7.9e-110 401.4 368 57.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 1.5e-108 397.1 330 61.5
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 3.3e-108 396.0 368 56.8
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 3.3e-108 396.0 352 59.1
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 2.1e-102 376.7 283 65.4
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 6.0e-102 375.2 353 55.5
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.0e-96 357.8 408 49.5
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.3e-96 357.5 311 56.3
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.2e-95 352.8 333 56.2
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 5.7e-92 342.0 305 53.8
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 4.8e-91 339.0 310 56.8
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.5e-89 334.0 260 65.0
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 1.6e-86 323.9 293 53.9
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 6.1e-86 322.0 339 52.2
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 2.3e-77 293.5 301 49.5
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 4.2e-71 272.7 237 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.6e-70 269.6 213 59.6
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 7.9e-70 268.5 288 42.7
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 3.0e-69 266.5 302 44.4
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.8e-66 257.3 281 47.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 6.7e-61 238.8 293 44.0
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 1.5e-52 211.1 205 50.7
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.2e-48 197.2 129 72.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 2.4e-34 150.6 150 50.0
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.3e-32 144.8 90 74.4
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 5.6e-31 139.4 82 78.0
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.6e-28 130.6 196 37.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.0e-24 116.3 69 72.5
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 2.4e-10 70.9 101 36.6
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 5.4e-10 69.7 42 76.2
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.6e-09 68.2 69 52.2


User provided reference genes

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