Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 5.4e-309 1063.5 553 100.0
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 1.4e-227 793.1 555 73.5
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 4.0e-227 791.6 553 73.4
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 2.6e-226 788.9 555 73.3
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 8.3e-225 783.9 555 73.2
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 1.3e-222 776.5 558 72.6
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.6e-220 769.6 555 70.8
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.6e-220 769.6 555 71.0
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 6.1e-220 767.7 557 72.7
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 8.0e-220 767.3 554 71.7
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 1.2e-218 763.5 555 70.3
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 6.3e-217 757.7 555 71.9
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 7.0e-216 754.2 553 71.6
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 7.0e-216 754.2 552 70.7
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 2.7e-215 752.3 555 70.6
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 3.5e-215 751.9 593 66.6
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 7.7e-215 750.7 555 69.7
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 1.0e-214 750.4 552 68.7
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.9e-214 748.8 553 70.9
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 2.9e-214 748.8 555 70.1
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 5.0e-214 748.0 561 70.6
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.5e-213 745.7 553 70.7
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 7.2e-213 744.2 555 70.5
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 9.5e-213 743.8 555 68.6
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 4.7e-212 741.5 550 70.4
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 3.0e-211 738.8 551 71.0
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 3.4e-210 735.3 555 67.4
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 7.5e-210 734.2 554 69.3
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 2.2e-209 732.6 552 68.7
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.8e-209 732.3 575 68.9
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.9e-209 731.5 575 68.9
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 2.4e-208 729.2 559 68.9
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 4.1e-208 728.4 555 68.1
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 4.1e-208 728.4 555 69.0
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 2.0e-207 726.1 549 68.5
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 2.0e-207 726.1 560 69.6
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 7.8e-207 724.2 553 67.5
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 8.6e-206 720.7 552 67.9
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 1.9e-205 719.5 554 68.2
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 5.6e-205 718.0 522 72.2
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 9.5e-205 717.2 554 63.4
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 1.6e-204 716.5 549 69.2
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 3.6e-204 715.3 555 67.9
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 4.7e-204 714.9 550 66.5
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.4e-203 713.4 557 66.6
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 3.1e-203 712.2 555 66.3
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 4.0e-203 711.8 555 67.9
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 2.0e-202 709.5 558 67.7
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 1.4e-200 703.4 550 66.4
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 7.0e-200 701.0 551 67.3
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 6.0e-199 698.0 550 66.7
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.7e-198 696.4 575 63.8
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 8.6e-198 694.1 550 66.4
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 8.6e-198 694.1 550 66.5
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 2.5e-197 692.6 550 66.5
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 2.5e-197 692.6 556 66.9
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 3.3e-197 692.2 550 66.4
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 3.3e-197 692.2 550 66.4
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 5.6e-197 691.4 553 66.2
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 5.6e-197 691.4 556 65.5
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.4e-195 686.8 553 65.6
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 2.3e-195 686.0 574 65.9
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 4.0e-195 685.3 524 67.4
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 5.2e-195 684.9 551 64.2
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 2.6e-194 682.6 553 65.5
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 2.6e-194 682.6 551 63.9
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.7e-193 679.9 562 64.4
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 6.4e-193 677.9 583 63.0
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 3.2e-192 675.6 584 63.0
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 7.1e-192 674.5 553 64.2
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 2.7e-191 672.5 554 63.2
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 1.7e-190 669.8 552 65.4
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 1.9e-189 666.4 550 64.9
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 3.7e-185 652.1 528 67.0
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 3.7e-185 652.1 572 62.6
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 3.2e-184 649.0 559 62.8
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 1.6e-180 636.7 554 60.6
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 6.8e-179 631.3 460 72.4
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 8.9e-179 630.9 463 71.1
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 9.6e-173 610.9 552 60.7
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 4.0e-171 605.5 466 68.0
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 2.0e-170 603.2 431 71.5
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 7.6e-170 601.3 553 59.0
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 6.0e-167 591.7 551 57.7
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 7.9e-159 564.7 448 67.2
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 6.9e-155 551.6 441 67.6
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 6.2e-148 528.5 442 61.8
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 2.4e-139 500.0 417 64.5
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 2.2e-137 493.4 433 62.1
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 6.9e-131 471.9 359 71.3
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 6.9e-131 471.9 490 54.5
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 4.4e-125 452.6 595 45.9
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 4.5e-122 442.6 404 56.7
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 6.1e-119 432.2 603 42.3
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 2.8e-116 423.3 582 42.4
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.7e-113 414.1 355 58.3
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 1.1e-112 411.4 355 63.7
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.1e-111 407.1 355 63.7
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 1.0e-97 361.7 533 39.2
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.7e-95 352.8 575 39.0
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 1.6e-90 337.8 355 55.8
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.7e-81 307.8 363 49.6
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 4.3e-80 303.1 400 43.0
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 1.7e-57 228.0 541 33.1
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 1.3e-55 221.9 633 28.6
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.4e-51 208.4 215 50.7
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 1.6e-50 204.9 178 57.3
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 2.7e-50 204.1 267 46.1
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 3.5e-50 203.8 634 27.9
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 1.3e-49 201.8 296 42.2
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 1.3e-47 195.3 138 68.1
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 1.6e-42 178.3 107 79.4
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.6e-42 178.3 288 40.3
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 7.9e-42 176.0 162 58.0
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 3.9e-41 173.7 106 75.5
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 1.1e-40 172.2 226 42.9
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 3.3e-40 170.6 104 75.0
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 5.6e-40 169.9 160 56.2
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 2.1e-39 167.9 109 71.6
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 5.3e-38 163.3 409 30.3
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 8.4e-36 156.0 114 67.5
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 2.5e-35 154.5 155 53.5
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 2.5e-35 154.5 155 53.5
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 2.1e-34 151.4 145 56.6
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 8.5e-28 129.4 130 50.8
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.9e-27 128.3 149 47.0
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 5.5e-27 126.7 86 62.8
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.3e-25 122.1 87 66.7
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 9.0e-22 109.4 83 60.2
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.5e-21 108.6 63 73.0
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 3.4e-21 107.5 62 79.0
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 5.1e-17 93.6 241 28.6
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 8.8e-17 92.8 234 26.1
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 2.6e-16 91.3 223 26.5
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 2.6e-16 91.3 212 26.4
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 3.3e-16 90.9 235 26.8
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 9.7e-16 89.4 221 26.2
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.3e-15 89.0 238 25.2
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 2.2e-15 88.2 238 25.6
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 2.8e-15 87.8 230 25.2
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 2.8e-15 87.8 230 25.2
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 3.7e-15 87.4 242 23.6
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 6.3e-15 86.7 229 24.9
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 1.1e-14 85.9 225 26.7
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.8e-14 85.1 64 57.8
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 1.8e-14 85.1 238 31.9
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 2.4e-14 84.7 238 25.6
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 3.1e-14 84.3 231 26.0
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 5.3e-14 83.6 228 25.9
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 5.3e-14 83.6 244 25.0
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 6.9e-14 83.2 221 25.8
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 9.1e-14 82.8 223 24.7
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 9.1e-14 82.8 223 25.1
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 1.2e-13 82.4 244 25.4
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.2e-13 82.4 231 25.5
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 2.6e-13 81.3 244 24.6
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 3.4e-13 80.9 210 27.6
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 3.4e-13 80.9 225 25.8
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 5.9e-13 80.1 202 28.2
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 7.7e-13 79.7 237 24.1
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 1.3e-12 79.0 221 24.4
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 2.2e-12 78.2 221 24.9
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 2.2e-12 78.2 221 24.9
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 3.8e-12 77.4 53 73.6
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 3.8e-12 77.4 220 23.6
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 6.5e-12 76.6 221 23.5
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 1.1e-11 75.9 234 23.9
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.9e-11 75.1 243 25.1
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 9.4e-11 72.8 243 24.7
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 1.2e-10 72.4 245 24.1
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 2.3e-09 68.2 189 23.3
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 2.3e-09 68.2 189 23.3
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 3.0e-09 67.8 264 23.1
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 3.9e-09 67.4 189 23.3
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 5.2e-09 67.0 41 68.3
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.5e-08 65.5 161 28.0
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 2.6e-08 64.7 42 73.8
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 7.4e-08 63.2 157 28.0
BolC6t35802H Brassica oleracea HOM05D005251 ORTHO05D006680 1.7e-07 62.0 55 56.4
PRCOL_00006475 Prasinoderma coloniale HOM05D003636 ORTHO05D005160 7.0e-06 56.6 246 22.0


User provided reference genes

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