Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 3.6e-111 404.8 190 100.0
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.7e-108 394.8 190 97.4
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 2.4e-107 392.1 191 97.4
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 9.1e-107 390.2 191 96.9
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.1e-88 330.1 186 80.6
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.5e-88 329.7 186 80.1
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.9e-88 329.3 189 79.4
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 7.3e-88 327.4 189 78.3
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 1.6e-87 326.2 190 77.9
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.2e-85 320.1 190 74.2
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.2e-85 320.1 190 77.4
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 3.4e-85 318.5 190 73.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 3.4e-85 318.5 205 73.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 76.3
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 76.3
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 9.8e-85 317.0 189 74.6
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 76.8
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.3e-84 316.6 190 77.9
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.7e-84 316.2 187 75.4
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.7e-84 316.2 187 75.4
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 2.2e-84 315.8 190 74.2
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 2.2e-84 315.8 190 74.7
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.7e-84 315.1 190 75.8
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 8.3e-84 313.9 189 74.1
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 8.3e-84 313.9 190 74.7
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 2.4e-83 312.4 189 73.5
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 3.2e-83 312.0 190 73.7
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 3.2e-83 312.0 190 74.2
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 5.4e-83 311.2 190 75.8
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 9.2e-83 310.5 187 74.3
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 9.2e-83 310.5 187 73.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.2e-82 310.1 188 73.4
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.2e-82 310.1 188 72.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 1.6e-82 309.7 190 73.7
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.6e-82 309.7 189 73.5
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 2.0e-82 309.3 187 75.4
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.6e-82 308.1 189 70.9
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 6.0e-82 307.8 189 76.7
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.0e-81 307.0 187 72.7
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.3e-81 306.6 187 73.3
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 1.7e-81 306.2 187 73.3
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 3.0e-81 305.4 190 70.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.0e-81 305.4 187 73.3
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.0e-81 305.4 187 73.3
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.1e-80 303.5 190 71.6
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.5e-80 302.4 186 74.7
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 7.3e-80 300.8 190 69.5
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 1.6e-79 299.7 188 71.8
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 3.6e-79 298.5 186 74.2
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 3.6e-79 298.5 221 64.7
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.7e-79 298.1 186 72.6
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.1e-78 297.0 187 72.2
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 2.3e-78 295.8 191 70.2
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 2.3e-78 295.8 190 70.0
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.3e-78 295.8 189 69.3
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 8.9e-78 293.9 191 71.2
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 1.5e-77 293.1 190 70.0
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 2.6e-77 292.4 188 70.2
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 3.4e-77 292.0 186 71.5
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 3.4e-77 292.0 190 70.0
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 4.4e-77 291.6 190 68.4
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 5.8e-77 291.2 190 67.9
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 7.5e-77 290.8 190 68.9
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 9.8e-77 290.4 190 68.4
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 9.8e-77 290.4 190 68.4
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 9.8e-77 290.4 190 67.9
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.3e-76 290.0 190 70.5
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 1.7e-76 289.7 190 68.9
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.7e-76 289.7 190 70.5
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.2e-76 289.3 190 67.9
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.2e-76 289.3 190 68.9
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.7e-76 288.5 189 69.3
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 3.7e-76 288.5 192 70.3
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 4.9e-76 288.1 190 69.5
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.9e-76 288.1 188 69.7
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 8.3e-76 287.3 185 70.8
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 8.3e-76 287.3 186 69.9
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.4e-75 286.6 191 68.1
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.4e-75 286.6 188 68.1
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.4e-75 285.8 189 70.4
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 3.2e-75 285.4 189 68.3
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 69.1
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 69.3
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.1e-74 282.7 189 66.1
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 2.7e-74 282.3 193 67.4
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 6.0e-74 281.2 190 67.4
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.0e-73 280.4 190 67.9
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 7.3e-72 274.2 190 65.3
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.6e-71 271.9 186 65.6
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 6.2e-71 271.2 228 56.6
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 8.1e-71 270.8 184 65.8
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.3e-70 269.2 188 66.5
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 5.8e-69 264.6 190 63.7
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.8e-69 264.6 186 64.0
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 7.6e-69 264.2 191 65.4
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 9.9e-69 263.8 184 64.7
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.9e-68 262.3 189 66.1
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.4e-67 258.1 185 63.8
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 2.1e-66 256.1 146 77.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 3.5e-66 255.4 188 63.8
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.0e-66 254.6 186 65.1
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.7e-65 253.1 185 62.7
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 5.6e-64 248.1 188 63.8
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.6e-64 248.1 145 76.6
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 9.6e-64 247.3 188 63.3
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 6.2e-63 244.6 187 62.0
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.8e-62 243.0 185 60.5
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.0e-62 241.9 185 59.5
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 8.9e-62 240.7 188 61.2
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 8.9e-62 240.7 184 63.0
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.5e-61 240.0 186 62.9
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.7e-60 236.5 180 63.3
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 3.5e-58 228.8 185 58.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.9e-56 223.0 186 58.6
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.3e-55 220.3 132 75.8
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.1e-54 217.2 189 57.7
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 9.0e-54 214.2 180 57.2
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 7.6e-53 211.1 188 52.1
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 3.8e-52 208.8 186 52.7
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 1.1e-40 170.6 111 68.5
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 8.7e-33 144.4 110 60.0
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.4e-32 141.4 82 73.2
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.5e-29 133.7 82 73.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 5.1e-25 118.6 99 56.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.0e-21 106.7 116 50.9
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.1e-18 96.7 87 49.4
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 8.5e-12 74.7 78 46.2
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 1.5e-08 63.9 195 28.7


User provided reference genes

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