Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 0.0e+00 1159.1 704 100.0
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.7e-228 795.8 724 68.0
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.7e-225 785.0 724 66.3
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.4e-223 778.9 536 75.7
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.7e-222 776.5 536 75.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 7.0e-221 771.2 724 68.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.2e-215 753.8 726 73.0
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.8e-215 751.5 728 72.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.3e-214 750.4 525 74.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-214 750.0 719 67.0
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 3.7e-214 748.8 719 67.2
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.4e-213 746.9 523 73.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-213 746.5 719 65.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 7.1e-213 744.6 490 76.9
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.6e-212 741.9 534 73.0
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.3e-211 739.6 715 67.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.6e-210 734.9 719 66.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.1e-209 733.0 531 70.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.4e-208 730.3 524 72.5
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 6.8e-208 728.0 519 72.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 8.9e-208 727.6 519 71.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-207 727.2 527 72.5
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-207 727.2 527 72.3
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-207 726.5 527 72.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 7.6e-207 724.5 519 72.1
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-206 723.8 523 72.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 6.4e-206 721.5 520 71.9
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 7.1e-205 718.0 527 71.7
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 7.3e-202 708.0 540 70.2
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.6e-201 705.7 538 69.9
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.4e-199 698.7 520 70.6
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.6e-199 698.0 520 70.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 4.2e-197 692.2 529 69.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-196 690.6 524 69.5
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 2.5e-194 682.9 515 69.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 5.6e-194 681.8 520 70.0
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.1e-193 679.9 527 68.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.8e-193 679.5 531 67.2
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.4e-192 676.4 707 67.3
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.6e-191 672.9 528 67.8
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.3e-190 670.6 528 67.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.1e-189 667.5 455 74.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 7.1e-189 664.8 538 66.7
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.1e-188 663.3 539 64.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 4.6e-188 662.1 530 67.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.0e-187 661.0 524 66.4
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.0e-187 659.4 514 68.3
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.5e-186 657.1 471 72.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.8e-184 650.2 526 66.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 9.0e-184 647.9 517 66.3
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.2e-183 647.5 517 65.4
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.5e-183 647.1 514 66.7
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 5.8e-183 645.2 532 64.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 7.6e-183 644.8 534 65.0
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.3e-182 644.0 531 67.0
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.2e-182 643.3 535 64.3
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.9e-182 642.1 521 66.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.9e-181 640.2 524 66.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.0e-179 632.9 408 78.2
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.9e-179 632.5 524 66.4
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.3e-178 629.4 540 64.1
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.3e-178 629.0 423 73.5
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.8e-177 626.3 531 64.8
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.5e-175 620.5 529 63.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.0e-175 620.2 543 63.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.1e-173 614.4 533 61.9
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.9e-173 613.6 456 70.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.2e-172 610.9 533 60.4
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.1e-172 610.1 527 62.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.5e-172 609.4 523 61.8
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.0e-171 607.8 566 60.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.8e-171 607.1 520 62.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.1e-170 604.4 484 67.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.5e-170 603.2 530 62.1
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.3e-170 602.8 522 63.4
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.7e-170 602.1 722 58.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 5.7e-170 602.1 421 71.7
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.4e-168 596.7 505 62.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.1e-168 596.3 551 60.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 5.3e-168 595.5 534 62.4
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.0e-166 591.3 528 61.6
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.5e-166 588.6 519 62.2
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.9e-165 587.0 514 60.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.6e-164 583.9 435 69.4
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-164 582.4 394 72.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.5e-162 576.6 495 63.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 3.7e-161 572.8 509 60.5
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.8e-160 570.5 530 60.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.1e-160 569.7 515 57.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.0e-158 562.4 528 60.0
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.1e-157 561.2 536 58.4
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.5e-157 560.1 454 65.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-156 557.0 473 60.7
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.7e-156 556.6 466 63.9
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 6.3e-153 545.4 422 66.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 8.2e-153 545.0 525 57.1
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 8.2e-153 545.0 452 62.8
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.0e-150 535.8 513 58.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 6.5e-150 535.4 492 58.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.2e-149 533.1 537 56.1
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.6e-148 530.8 448 61.8
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 8.0e-148 528.5 442 62.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.0e-146 523.9 373 68.9
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.1e-144 518.1 522 56.7
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 4.1e-144 516.2 391 69.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.3e-144 515.8 481 58.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 8.5e-142 508.4 454 60.4
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.0e-139 500.0 504 56.7
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.6e-132 476.5 416 59.1
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.4e-128 463.8 378 62.4
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.1e-120 436.4 438 56.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.1e-117 428.3 424 55.7
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 8.9e-115 418.7 359 64.1
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 5.8e-114 416.0 327 62.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 6.0e-111 406.0 354 59.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.8e-107 394.4 285 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.8e-107 394.4 428 52.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.7e-105 387.9 413 50.8
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 5.4e-104 382.9 349 57.6
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.5e-101 372.1 440 50.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.2e-88 330.1 213 76.5
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 7.1e-88 329.3 494 44.3
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-87 328.6 461 65.3
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 8.7e-86 322.4 302 60.3
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.1e-79 301.2 495 41.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-75 288.5 211 67.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.4e-75 287.7 395 45.1
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.1e-75 287.3 353 45.3
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.5e-66 258.5 189 68.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.7e-54 216.5 192 56.2
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 9.4e-48 196.1 223 49.8
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-44 184.9 172 55.8
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.2e-44 183.0 518 28.4
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.4e-35 155.6 189 48.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.7e-31 141.4 95 71.6
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 6.1e-31 140.2 95 70.5
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.1e-29 136.0 121 60.3
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.8e-27 128.6 94 63.8
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 7.0e-27 126.7 120 62.5
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.0e-26 125.2 239 35.1
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-23 115.9 144 54.2
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 4.0e-22 110.9 357 26.3
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 8.3e-20 103.2 87 59.8
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.6e-15 87.8 145 39.3
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.8e-14 83.2 106 50.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 5.7e-13 80.5 105 43.8
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.2e-12 78.6 161 34.8
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 3.7e-12 77.8 120 47.5
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 8.3e-12 76.6 136 37.5
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 4.1e-11 74.3 119 42.9
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 3.3e-08 64.7 44 61.4
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.8e-06 58.9 64 53.1


User provided reference genes

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