Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0578 Cannabis sativa HOM05D001047 ORTHO05D000768 1.8e-79 299.3 157 100.0
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 3.3e-54 215.3 119 97.5
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 6.3e-21 104.8 132 50.8
Duzib150G1532 Durio zibethinus HOM05D001047 ORTHO05D000768 5.4e-20 101.7 118 52.5
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 2.7e-19 99.4 118 50.8
MD15G1225800 Malus domestica HOM05D001047 ORTHO05D000768 3.5e-19 99.0 116 51.7
Gohir.D07G018200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 5.9e-19 98.2 114 53.5
Gorai.001G018800 Gossypium raimondii HOM05D001047 ORTHO05D000768 5.9e-19 98.2 114 53.5
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 7.7e-19 97.8 118 50.8
Gohir.A07G018400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.0e-18 97.4 117 50.4
FAN23G0009 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.5e-18 94.7 150 45.3
FAN23G0978 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.5e-18 94.7 150 45.3
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 6.5e-18 94.7 142 45.8
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 1.5e-17 93.6 115 52.2
FAN19G2610 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.9e-17 93.2 151 43.0
FAN26G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.9e-17 93.2 151 43.0
FAN26G1307 Fragaria x ananassa HOM05D001047 ORTHO05D000768 2.5e-17 92.8 151 43.0
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 3.3e-17 92.4 146 43.8
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 3.3e-17 92.4 108 50.9
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 5.5e-17 91.7 117 48.7
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 7.2e-17 91.3 115 48.7
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 9.5e-17 90.9 116 50.0
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.2e-16 90.5 117 49.6
Psat1g016520 Pisum sativum HOM05D001047 ORTHO05D000768 1.2e-16 90.5 113 52.2
Ca_02314_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 1.6e-16 90.1 117 52.1
Lj6g0013412 Lotus japonicus HOM05D001047 ORTHO05D000768 2.1e-16 89.7 114 51.8
TPR.G18015 Trifolium pratense HOM05D001047 ORTHO05D000768 2.1e-16 89.7 115 51.3
RcHm_v2.0_Chr2g0096551 Rosa chinensis HOM05D001047 ORTHO05D000768 2.8e-16 89.4 148 42.6
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 4.7e-16 88.6 108 50.9
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 6.1e-16 88.2 117 45.3
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 6.1e-16 88.2 117 45.3
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 1.8e-15 86.7 116 49.1
Gohir.A05G037500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 3.0e-15 85.9 120 46.7
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 4.0e-15 85.5 107 46.7
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 5.2e-15 85.1 107 45.8
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 5.2e-15 85.1 107 45.8
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 5.2e-15 85.1 108 45.4
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 8.9e-15 84.3 107 48.6
BolC2t07081H Brassica oleracea HOM05D001047 ORTHO05D000768 8.9e-15 84.3 113 44.2
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 8.9e-15 84.3 107 48.6
Gohir.D05G039000 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.2e-14 84.0 119 46.2
Gorai.009G039500 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.2e-14 84.0 119 46.2
Medtr2g044910 Medicago truncatula HOM05D001047 ORTHO05D000768 1.5e-14 83.6 114 50.9
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 1.5e-14 83.6 112 48.2
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 2.0e-14 83.2 113 41.6
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 2.6e-14 82.8 108 50.9
AT5G20900 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 3.4e-14 82.4 113 44.2
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 3.4e-14 82.4 117 44.4
BcaC03g13812 Brassica carinata HOM05D001047 ORTHO05D000768 5.7e-14 81.6 119 42.9
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 5.7e-14 81.6 111 46.8
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 7.5e-14 81.3 103 46.6
MBI13_g05964_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 7.5e-14 81.3 75 57.3
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 7.5e-14 81.3 118 48.3
Aa31LG4G13350 Aethionema arabicum HOM05D001047 ORTHO05D000768 9.8e-14 80.9 111 45.0
Sp6g23620 Schrenkiella parvula HOM05D001047 ORTHO05D000768 9.8e-14 80.9 113 42.5
AL6G32450 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 2.2e-13 79.7 134 40.3
BNapus_Darmor_BZH_scaffold_38p01280 Brassica napus HOM05D001047 ORTHO05D000768 2.2e-13 79.7 113 44.2
BraA02t05602Z Brassica rapa HOM05D001047 ORTHO05D000768 2.2e-13 79.7 113 44.2
C02p10500 Brassica napus HOM05D001047 ORTHO05D000768 3.7e-13 79.0 113 44.2
Lalb_Chr12g0200421 Lupinus albus HOM05D001047 ORTHO05D000768 3.7e-13 79.0 115 46.1
Carub.0006s1919 Capsella rubella HOM05D001047 ORTHO05D000768 4.9e-13 78.6 113 43.4
Ca_21352_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 1.1e-12 77.4 114 49.1
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 1.4e-12 77.0 111 44.1
CARHR191950 Cardamine hirsuta HOM05D001047 ORTHO05D000768 3.1e-12 75.9 113 40.7
BcaB05g22803 Brassica carinata HOM05D001047 ORTHO05D000768 4.1e-12 75.5 111 43.2
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 4.1e-12 75.5 117 48.7
TWI63G0579 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 1.6e-11 73.6 109 45.0
Lj4g0027867 Lotus japonicus HOM05D001047 ORTHO05D000768 2.0e-11 73.2 114 46.5
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.5e-11 72.0 108 44.4
Medtr4g124360 Medicago truncatula HOM05D001047 ORTHO05D000768 1.7e-10 70.1 114 46.5
THA.LOC104799600 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 1.7e-10 70.1 113 40.7
Psat4g020200 Pisum sativum HOM05D001047 ORTHO05D000768 5.0e-10 68.6 113 46.0
Aa31LG1G13860 Aethionema arabicum HOM05D000048 ORTHO05D000436 1.1e-09 67.4 113 41.6
BcaB08g37320 Brassica carinata HOM05D001047 ORTHO05D000768 1.1e-09 67.4 97 47.4
Os04g0653000 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.1e-09 67.4 117 41.9
THA.LOC104815065 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 1.1e-09 67.4 122 40.2
TPR.G12661 Trifolium pratense HOM05D001047 ORTHO05D000768 1.9e-09 66.6 114 42.1
VMungo1215G2562 Vigna mungo HOM05D001047 ORTHO05D000768 2.5e-09 66.2 115 40.9
Phvul.003G125700 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 3.3e-09 65.9 115 41.7
COL.COLO4_21176 Corchorus olitorius HOM05D001047 ORTHO05D000768 9.5e-09 64.3 51 68.6
Glyma.13G116100 Glycine max HOM05D001047 ORTHO05D000768 9.5e-09 64.3 104 45.2
Glyma.17G043700 Glycine max HOM05D001047 ORTHO05D000768 9.5e-09 64.3 102 42.2
Zm00001eb325530 Zea mays HOM05D001047 ORTHO05D000768 2.1e-08 63.2 62 59.7
Zm00001eb384630 Zea mays HOM05D001047 ORTHO05D000768 2.1e-08 63.2 62 59.7
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 2.3e-07 59.7 118 36.4
Nn5g27879 Nelumbo nucifera HOM05D001047 ORTHO05D000768 5.2e-07 58.5 121 35.5
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 8.9e-07 57.8 41 68.3
AL5G21390 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 1.5e-06 57.0 117 39.3
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 1.5e-06 57.0 104 40.4
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 1.5e-06 57.0 104 40.4
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 3.4e-06 55.8 118 31.4
arahy.Tifrunner.gnm1.ann1.25PL5E Arachis hypogaea HOM05D001047 ORTHO05D000768 4.4e-06 55.5 99 45.5
arahy.Tifrunner.gnm1.ann1.TPQ86D Arachis hypogaea HOM05D001047 ORTHO05D000768 4.4e-06 55.5 99 45.5
SGA_v2.0_scaffold31G12677 Striga asiatica HOM05D001047 ORTHO05D000768 5.8e-06 55.1 111 36.0
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 5.8e-06 55.1 104 39.4
C02p32160 Brassica napus HOM05D001047 ORTHO05D000768 9.8e-06 54.3 104 37.5
CDE06G0301 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 9.8e-06 54.3 95 40.0
Zm00001eb220310 Zea mays HOM05D001047 ORTHO05D000768 9.8e-06 54.3 107 38.3


User provided reference genes

Program Settings