Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0159 Cannabis sativa HOM05D000947 ORTHO05D000079 2.5e-116 422.9 370 100.0
CANSAT56G4332 Cannabis sativa HOM05D000947 ORTHO05D000079 2.5e-116 422.9 370 91.9
Cfa003091 Carpinus fangiana HOM05D000947 ORTHO05D000079 8.5e-16 89.0 346 28.0
Haze_25908 Corylus avellana HOM05D000947 ORTHO05D000079 2.5e-15 87.4 99 53.5
Duzib168G0218 Durio zibethinus HOM05D000947 ORTHO05D000079 2.5e-15 87.4 380 31.8
Manes.16G102600 Manihot esculenta HOM05D000947 ORTHO05D000079 1.2e-14 85.1 378 27.0
Atru.chr7.1584 Acer truncatum HOM05D000947 ORTHO05D000079 7.9e-14 82.4 68 61.8
Ciclev10009004m.g Citrus clementina HOM05D000947 ORTHO05D000079 7.9e-14 82.4 66 66.7
TWI34G0236 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 2.3e-13 80.9 139 41.0
Manes.03G033200 Manihot esculenta HOM05D000947 ORTHO05D000079 5.1e-13 79.7 63 63.5
Nn8g38877 Nelumbo nucifera HOM05D000947 ORTHO05D000079 2.0e-12 77.8 139 40.3
CiPaw.03G216700 Carya illinoinensis HOM05D000947 ORTHO05D000079 2.5e-12 77.4 262 29.8
Thecc.09G089800 Theobroma cacao HOM05D000947 ORTHO05D000079 4.3e-12 76.6 60 70.0
Nn6g35464 Nelumbo nucifera HOM05D000947 ORTHO05D000079 5.7e-12 76.3 136 39.0
TWI63G0009 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 5.7e-12 76.3 64 60.9
Lj4g0025871 Lotus japonicus HOM05D000947 ORTHO05D000079 1.3e-11 75.1 244 32.0
Gohir.A06G072400 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.7e-11 74.7 135 46.7
Gorai.010G082800 Gossypium raimondii HOM05D000947 ORTHO05D000079 2.8e-11 73.9 135 48.9
Actinidia25254 Actinidia chinensis HOM05D000947 ORTHO05D000079 3.7e-11 73.6 63 66.7
Hma1.2p1_0800F.1_g220120 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 3.7e-11 73.6 254 32.3
Cpa.g.sc93.28 Carica papaya HOM05D000947 ORTHO05D000079 4.8e-11 73.2 246 30.1
COL.COLO4_18205 Corchorus olitorius HOM05D000947 ORTHO05D000079 8.2e-11 72.4 52 76.9
Sp6g18580 Schrenkiella parvula HOM05D000947 ORTHO05D000079 8.2e-11 72.4 45 75.6
Gohir.A05G029800 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.1e-10 72.0 57 64.9
Gohir.D05G031200 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.1e-10 72.0 57 64.9
Gohir.D06G071000 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.1e-10 72.0 135 48.1
Gorai.009G031400 Gossypium raimondii HOM05D000947 ORTHO05D000079 1.1e-10 72.0 57 64.9
Actinidia39720 Actinidia chinensis HOM05D000947 ORTHO05D000079 2.4e-10 70.9 64 64.1
TAR624G0462 Trochodendron aralioides HOM05D000947 ORTHO05D000079 2.4e-10 70.9 58 63.8
BcaB05g22295 Brassica carinata HOM05D000947 ORTHO05D000079 3.1e-10 70.5 45 73.3
Lj7A675G39 Lonicera japonica HOM05D000947 ORTHO05D000079 3.1e-10 70.5 96 44.8
CARHR270600 Cardamine hirsuta HOM05D000947 ORTHO05D000079 4.1e-10 70.1 45 71.1
Dinv27985 Davidia involucrata HOM05D000947 ORTHO05D000079 4.1e-10 70.1 253 28.1
Thhalv10013793m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 4.1e-10 70.1 45 71.1
Hma1.2p1_0798F.1_g219800 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 4.1e-10 70.1 51 66.7
vmacro06289 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 4.1e-10 70.1 60 63.3
HPP92_020003 Vanilla planifolia HOM05D000947 ORTHO05D000079 4.1e-10 70.1 61 57.4
AL8G32710 Arabidopsis lyrata HOM05D000947 ORTHO05D000079 5.3e-10 69.7 45 68.9
BcaB08g36050 Brassica carinata HOM05D000947 ORTHO05D000079 5.3e-10 69.7 45 71.1
Dinv36764 Davidia involucrata HOM05D000947 ORTHO05D000079 5.3e-10 69.7 250 32.0
MBI04_g34133_MAGBIO Magnolia biondii HOM05D000947 ORTHO05D000079 5.3e-10 69.7 56 64.3
Peaxi162Scf00498g00122 Petunia axillaris HOM05D000947 ORTHO05D000079 5.3e-10 69.7 72 52.8
BcaC03g14201 Brassica carinata HOM05D000947 ORTHO05D000079 6.9e-10 69.3 45 71.1
C02p14870 Brassica napus HOM05D000947 ORTHO05D000079 6.9e-10 69.3 45 71.1
BolC2t07616H Brassica oleracea HOM05D000947 ORTHO05D000079 6.9e-10 69.3 45 71.1
Carub.0008s1732 Capsella rubella HOM05D000947 ORTHO05D000079 6.9e-10 69.3 45 71.1
AT5G56860 Arabidopsis thaliana HOM05D000947 ORTHO05D000079 9.1e-10 68.9 45 68.9
A02p08910 Brassica napus HOM05D000947 ORTHO05D000079 9.1e-10 68.9 45 71.1
BraA02t05960Z Brassica rapa HOM05D000947 ORTHO05D000079 9.1e-10 68.9 45 71.1
Lalb_Chr08g0232061 Lupinus albus HOM05D000947 ORTHO05D000079 9.1e-10 68.9 137 41.6
Lalb_Chr13g0299731 Lupinus albus HOM05D000947 ORTHO05D000079 9.1e-10 68.9 140 35.7
MD15G1206700 Malus domestica HOM05D000947 ORTHO05D000079 9.1e-10 68.9 78 53.8
Nitab4.5_0009931g0020 Nicotiana tabacum HOM05D000947 ORTHO05D000079 9.1e-10 68.9 73 52.1
PGR142G2851 Punica granatum HOM05D000947 ORTHO05D000079 9.1e-10 68.9 136 39.0
Aa31LG3G12760 Aethionema arabicum HOM05D000947 ORTHO05D000079 1.2e-09 68.6 51 62.7
BcaC04g20049 Brassica carinata HOM05D000947 ORTHO05D000079 1.2e-09 68.6 45 68.9
BolC9t57690H Brassica oleracea HOM05D000947 ORTHO05D000079 1.2e-09 68.6 45 68.9
Oeu042649.1 Olea europaea HOM05D000947 ORTHO05D000079 1.2e-09 68.6 244 32.8
Rhsim05G0021900 Rhododendron simsii HOM05D000947 ORTHO05D000079 1.2e-09 68.6 61 59.0
C09p48470 Brassica napus HOM05D000947 ORTHO05D000079 1.5e-09 68.2 45 68.9
CSS0029151 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 1.5e-09 68.2 63 58.7
Prupe.7G210100 Prunus persica HOM05D000947 ORTHO05D000079 1.5e-09 68.2 151 41.1
PGSC0003DMG400004493 Solanum tuberosum HOM05D000947 ORTHO05D000079 1.5e-09 68.2 64 56.2
SGA_v2.0_scaffold23G10000 Striga asiatica HOM05D000947 ORTHO05D000079 1.5e-09 68.2 64 56.2
TPR.G35459 Trifolium pratense HOM05D000947 ORTHO05D000079 1.5e-09 68.2 135 37.0
RcHm_v2.0_Chr2g0093271 Rosa chinensis HOM05D000947 ORTHO05D000079 2.0e-09 67.8 371 28.8
Aa31LG3G530 Aethionema arabicum HOM05D000947 ORTHO05D000079 2.6e-09 67.4 44 68.2
TAR636G0193 Trochodendron aralioides HOM05D000947 ORTHO05D000079 2.6e-09 67.4 59 62.7
THA.LOC104818113 Tarenaya hassleriana HOM05D000947 ORTHO05D000079 3.4e-09 67.0 45 73.3
vmacro17228 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 3.4e-09 67.0 62 59.7
CSS0013528 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 4.5e-09 66.6 56 62.5
MSTRG.10566 Avicennia marina HOM05D000947 ORTHO05D000079 7.7e-09 65.9 273 30.0
COL.COLO4_21058 Corchorus olitorius HOM05D000947 ORTHO05D000079 7.7e-09 65.9 55 60.0
A10p14140 Brassica napus HOM05D000947 ORTHO05D000079 1.0e-08 65.5 45 66.7
BraA10t43506Z Brassica rapa HOM05D000947 ORTHO05D000079 1.0e-08 65.5 45 66.7
MBI01_g09952_MAGBIO Magnolia biondii HOM05D000947 ORTHO05D000079 1.0e-08 65.5 57 63.2
PSO210G0629 Papaver somniferum HOM05D000947 ORTHO05D000079 1.0e-08 65.5 47 66.0
GSVIVG01015204001 Vitis vinifera HOM05D000947 ORTHO05D000079 1.0e-08 65.5 250 29.2
BcaB01g04423 Brassica carinata HOM05D000947 ORTHO05D000079 1.3e-08 65.1 45 66.7
BolC3t13976H Brassica oleracea HOM05D000947 ORTHO05D000079 1.3e-08 65.1 45 66.7
DCAR_032241 Daucus carota HOM05D000947 ORTHO05D000079 1.3e-08 65.1 56 58.9
FAN26G2844 Fragaria x ananassa HOM05D000947 ORTHO05D000079 1.3e-08 65.1 121 39.7
Lalb_Chr07g0180811 Lupinus albus HOM05D000947 ORTHO05D000079 1.3e-08 65.1 46 69.6
PSO210G2956 Papaver somniferum HOM05D000947 ORTHO05D000079 1.3e-08 65.1 45 68.9
MELO3C015468.2 Cucumis melo HOM05D000947 ORTHO05D000079 1.7e-08 64.7 49 63.3
Medtr4g126350 Medicago truncatula HOM05D000947 ORTHO05D000079 1.7e-08 64.7 51 66.7
Solyc07g038160.4 Solanum lycopersicum HOM05D000947 ORTHO05D000079 1.7e-08 64.7 64 54.7
Sopen07g018310 Solanum pennellii HOM05D000947 ORTHO05D000079 1.7e-08 64.7 64 54.7
Thhalv10025461m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 2.2e-08 64.3 45 68.9
FAN26G0477 Fragaria x ananassa HOM05D000947 ORTHO05D000079 2.2e-08 64.3 399 34.3
A03p13120 Brassica napus HOM05D000947 ORTHO05D000079 2.9e-08 63.9 45 64.4
C03p15340 Brassica napus HOM05D000947 ORTHO05D000079 2.9e-08 63.9 45 64.4
BraA03t10623Z Brassica rapa HOM05D000947 ORTHO05D000079 2.9e-08 63.9 45 64.4
MD02G1078700 Malus domestica HOM05D000947 ORTHO05D000079 3.8e-08 63.5 249 41.8
TAR626G1258 Trochodendron aralioides HOM05D000947 ORTHO05D000079 3.8e-08 63.5 59 55.9
BcaNung02447 Brassica carinata HOM05D000947 ORTHO05D000079 5.0e-08 63.2 45 66.7
A03p56530 Brassica napus HOM05D000947 ORTHO05D000079 5.0e-08 63.2 45 66.7
BraA03t14723Z Brassica rapa HOM05D000947 ORTHO05D000079 5.0e-08 63.2 45 66.7
PGSC0003DMG400000280 Solanum tuberosum HOM05D000947 ORTHO05D000079 5.0e-08 63.2 48 64.6
THA.LOC104813261 Tarenaya hassleriana HOM05D000947 ORTHO05D000079 5.0e-08 63.2 44 70.5
Cc06_g11380 Coffea canephora HOM05D000947 ORTHO05D000079 6.5e-08 62.8 66 56.1
Oeu006972.1 Olea europaea HOM05D000947 ORTHO05D000079 6.5e-08 62.8 59 59.3
Rhsim03G0232600 Rhododendron simsii HOM05D000947 ORTHO05D000079 6.5e-08 62.8 62 56.5
AL7G26820 Arabidopsis lyrata HOM05D000947 ORTHO05D000079 8.5e-08 62.4 45 64.4
CAN.G1241.21 Capsicum annuum HOM05D000947 ORTHO05D000079 8.5e-08 62.4 44 70.5
FAN19G1273 Fragaria x ananassa HOM05D000947 ORTHO05D000079 8.5e-08 62.4 406 26.4
Glyma.09G062800 Glycine max HOM05D000947 ORTHO05D000079 8.5e-08 62.4 55 61.8
Glyma.15G169300 Glycine max HOM05D000947 ORTHO05D000079 8.5e-08 62.4 46 69.6
Phvul.009G232700 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 8.5e-08 62.4 55 60.0
Psat4g014760 Pisum sativum HOM05D000947 ORTHO05D000079 8.5e-08 62.4 43 72.1
TAR383G0027 Trochodendron aralioides HOM05D000947 ORTHO05D000079 8.5e-08 62.4 59 54.2
C07p54720 Brassica napus HOM05D000947 ORTHO05D000079 1.1e-07 62.0 51 58.8
BolC7t45961H Brassica oleracea HOM05D000947 ORTHO05D000079 1.1e-07 62.0 51 58.8
CsaV3_1G040390 Cucumis sativus L. HOM05D000947 ORTHO05D000079 1.1e-07 62.0 46 63.0
FAN28G2967 Fragaria x ananassa HOM05D000947 ORTHO05D000079 1.1e-07 62.0 388 30.4
Sopen12g003760 Solanum pennellii HOM05D000947 ORTHO05D000079 1.1e-07 62.0 44 68.2
ClCG03G015640 Citrullus lanatus HOM05D000947 ORTHO05D000079 1.4e-07 61.6 49 63.3
BcaC09g50673 Brassica carinata HOM05D000947 ORTHO05D000079 1.9e-07 61.2 41 70.7
C01p21950 Brassica napus HOM05D000947 ORTHO05D000079 1.9e-07 61.2 41 70.7
BolC1t02124H Brassica oleracea HOM05D000947 ORTHO05D000079 1.9e-07 61.2 41 70.7
arahy.Tifrunner.gnm1.ann1.2SUK7S Arachis hypogaea HOM05D000947 ORTHO05D000079 2.5e-07 60.8 47 63.8
arahy.Tifrunner.gnm1.ann1.3E7WJ6 Arachis hypogaea HOM05D000947 ORTHO05D000079 2.5e-07 60.8 47 63.8
Eucgr.C03895 Eucalyptus grandis HOM05D000947 ORTHO05D000079 2.5e-07 60.8 58 56.9
TPR.G893 Trifolium pratense HOM05D000947 ORTHO05D000079 2.5e-07 60.8 52 65.4
Nitab4.5_0005033g0050 Nicotiana tabacum HOM05D000947 ORTHO05D000079 3.2e-07 60.5 65 50.8
CSS0025336 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 4.2e-07 60.1 46 65.2
CSS0047041 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 4.2e-07 60.1 46 65.2
Solyc12g008830.3 Solanum lycopersicum HOM05D000947 ORTHO05D000079 4.2e-07 60.1 44 65.9
SGA_v2.0_scaffold21G09372 Striga asiatica HOM05D000947 ORTHO05D000079 4.2e-07 60.1 52 61.5
AT4G26150 Arabidopsis thaliana HOM05D000947 ORTHO05D000079 5.5e-07 59.7 45 62.2
Cfa017954 Carpinus fangiana HOM05D000947 ORTHO05D000079 5.5e-07 59.7 44 68.2
Haze_18190 Corylus avellana HOM05D000947 ORTHO05D000079 5.5e-07 59.7 44 68.2
Sp7g24170 Schrenkiella parvula HOM05D000947 ORTHO05D000079 5.5e-07 59.7 41 68.3
HPP92_021754 Vanilla planifolia HOM05D000947 ORTHO05D000079 5.5e-07 59.7 59 57.6
Ca_21277_v3 Cicer arietinum L. HOM05D000947 ORTHO05D000079 7.2e-07 59.3 45 66.7
FvH4_1g07390 Fragaria vesca HOM05D000947 ORTHO05D000079 7.2e-07 59.3 407 28.3
Phvul.003G137100 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 7.2e-07 59.3 140 33.6
VMungo1215G0469 Vigna mungo HOM05D000947 ORTHO05D000079 7.2e-07 59.3 60 56.7
Aqoxy7G04050 Aquilegia oxysepala HOM05D000947 ORTHO05D000079 9.4e-07 58.9 51 60.8
MSTRG.19517 Avicennia marina HOM05D000947 ORTHO05D000079 9.4e-07 58.9 46 65.2
Thecc.09G053800 Theobroma cacao HOM05D000947 ORTHO05D000079 9.4e-07 58.9 46 65.2
BcaC06g32766 Brassica carinata HOM05D000947 ORTHO05D000079 1.2e-06 58.5 45 64.4
Migut.J00606 Erythranthe guttata HOM05D000947 ORTHO05D000079 1.2e-06 58.5 51 58.8
Sc18g0002000 Simmondsia chinensis HOM05D000947 ORTHO05D000079 1.6e-06 58.2 52 55.8
Glyma.13G103900 Glycine max HOM05D000947 ORTHO05D000079 2.1e-06 57.8 43 67.4
Glyma.17G055200 Glycine max HOM05D000947 ORTHO05D000079 2.1e-06 57.8 43 67.4
Gohir.D05G043900 Gossypium hirsutum HOM05D000947 ORTHO05D000079 2.1e-06 57.8 51 56.9
Gorai.009G045000 Gossypium raimondii HOM05D000947 ORTHO05D000079 2.1e-06 57.8 51 56.9
Duzib168G0908 Durio zibethinus HOM05D000947 ORTHO05D000079 2.7e-06 57.4 137 35.0
Eucgr.C00899 Eucalyptus grandis HOM05D000947 ORTHO05D000079 2.7e-06 57.4 49 59.2
Migut.L01490 Erythranthe guttata HOM05D000947 ORTHO05D000079 3.6e-06 57.0 40 67.5
Gohir.A05G042200 Gossypium hirsutum HOM05D000947 ORTHO05D000079 3.6e-06 57.0 49 57.1
arahy.Tifrunner.gnm1.ann1.QY7BN7 Arachis hypogaea HOM05D000947 ORTHO05D000079 4.7e-06 56.6 42 64.3
Lsat_1_v5_gn_5_145340 Lactuca sativa HOM05D000947 ORTHO05D000079 4.7e-06 56.6 45 66.7
Sed0002794 Sechium edule HOM05D000947 ORTHO05D000079 4.7e-06 56.6 48 56.2
arahy.Tifrunner.gnm1.ann1.F7WS4I Arachis hypogaea HOM05D000947 ORTHO05D000079 6.1e-06 56.2 45 60.0
Carub.0007s1480 Capsella rubella HOM05D000947 ORTHO05D000079 6.1e-06 56.2 38 71.1
Gohir.D06G087500 Gossypium hirsutum HOM05D000947 ORTHO05D000079 6.1e-06 56.2 46 60.9
Gorai.010G101100 Gossypium raimondii HOM05D000947 ORTHO05D000079 6.1e-06 56.2 46 60.9
SalBow6G2589 Salvia bowleyana HOM05D000947 ORTHO05D000079 7.9e-06 55.8 58 55.2


User provided reference genes

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