Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 1.2e-222 776.2 377 100.0
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 5.4e-220 767.3 377 98.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.4e-146 523.5 370 71.1
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.9e-144 515.0 388 67.3
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.2e-142 510.4 351 71.2
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 4.6e-142 508.4 385 68.3
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 2.3e-141 506.1 364 69.5
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.5e-140 502.7 360 70.3
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 2.8e-139 499.2 372 67.7
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.8e-139 499.2 367 68.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.6e-139 498.8 372 67.7
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 6.2e-139 498.0 374 65.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 6.2e-139 498.0 342 71.1
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.3e-138 496.1 377 67.1
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 4.0e-138 495.4 391 65.0
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 4.0e-138 495.4 378 66.1
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.2e-136 489.6 330 71.2
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.2e-136 489.6 366 66.7
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 6.4e-136 488.0 375 64.5
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 3.2e-135 485.7 377 65.5
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.4e-135 485.0 372 65.9
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 4.6e-134 481.9 380 64.7
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.0e-133 480.7 362 65.2
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.3e-133 480.3 327 69.4
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.3e-133 479.6 355 65.9
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 3.9e-133 478.8 367 65.1
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 8.6e-133 477.6 352 67.6
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 8.6e-133 477.6 352 65.9
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 8.6e-133 477.6 367 64.9
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 8.6e-133 477.6 324 69.8
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 9.5e-132 474.2 384 62.5
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-131 473.8 391 61.6
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.2e-131 473.8 384 61.5
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 1.6e-131 473.4 329 69.3
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.1e-131 473.0 326 69.9
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 2.8e-131 472.6 352 66.8
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.8e-130 469.9 389 59.9
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.3e-130 469.5 325 68.9
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.2e-130 468.4 348 67.2
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 5.2e-130 468.4 358 64.8
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 2.6e-129 466.1 389 64.8
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.6e-129 466.1 360 65.0
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 3.4e-129 465.7 360 65.8
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 3.4e-129 465.7 343 66.2
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.3e-128 463.8 325 67.4
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 3.7e-128 462.2 339 67.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.7e-128 462.2 377 63.1
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 8.4e-128 461.1 325 68.3
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 8.4e-128 461.1 325 68.3
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 8.4e-128 461.1 343 66.5
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.1e-127 460.7 359 64.6
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.9e-127 459.9 327 67.6
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.9e-127 459.9 373 62.7
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 7.1e-127 458.0 327 67.6
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-126 456.4 346 64.5
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 2.1e-126 456.4 334 67.7
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 2.1e-126 456.4 364 62.9
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 4.6e-126 455.3 373 60.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.0e-125 454.1 333 67.3
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.0e-125 454.1 369 61.0
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 2.3e-125 453.0 387 60.5
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 3.9e-125 452.2 336 65.8
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 5.1e-125 451.8 373 60.6
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 8.6e-125 451.1 399 58.1
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 4.3e-124 448.7 342 66.7
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 5.6e-124 448.4 346 65.3
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.6e-124 448.4 398 59.8
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.1e-123 446.4 388 58.5
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.8e-123 446.0 325 65.5
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.2e-123 444.9 367 59.9
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.4e-122 443.7 361 63.4
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.8e-122 443.4 350 65.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 4.0e-122 442.2 358 62.0
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 6.8e-122 441.4 308 69.2
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 2.6e-121 439.5 368 60.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 5.8e-121 438.3 321 64.2
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.7e-120 436.8 340 66.5
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.4e-119 433.7 343 63.3
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.4e-119 433.7 306 69.3
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 9.3e-119 431.0 351 61.0
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.1e-118 429.9 344 62.5
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.6e-118 428.7 381 59.1
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.0e-117 427.6 343 62.4
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 1.3e-117 427.2 364 58.5
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 3.0e-117 426.0 342 60.5
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.9e-116 423.3 355 58.9
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 3.3e-116 422.5 324 63.6
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 8.1e-115 417.9 362 59.7
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 1.8e-114 416.8 351 62.1
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 6.9e-114 414.8 310 67.1
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 3.4e-113 412.5 367 58.3
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 9.9e-113 411.0 277 72.2
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 4.9e-112 408.7 323 63.5
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 6.4e-112 408.3 278 70.5
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 2.4e-111 406.4 275 72.0
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 4.2e-111 405.6 276 70.7
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 9.3e-111 404.4 367 57.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 3.0e-109 399.4 368 57.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 1.3e-107 394.0 330 61.2
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 4.8e-107 392.1 368 56.5
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.1e-106 391.0 352 58.2
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.0e-101 374.4 284 65.8
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 3.9e-101 372.5 353 55.2
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.4e-95 354.0 311 55.9
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 2.5e-95 353.2 408 49.3
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.6e-94 350.5 333 56.2
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 4.8e-91 339.0 305 53.4
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 4.1e-90 335.9 310 56.8
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 3.4e-89 332.8 260 65.0
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 4.6e-86 322.4 293 53.9
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 1.1e-84 317.8 339 51.9
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 8.8e-77 291.6 301 49.5
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 3.6e-70 269.6 288 43.1
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 7.9e-70 268.5 237 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.0e-69 266.5 213 58.7
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.6e-68 263.5 302 44.4
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.0e-65 253.8 281 47.0
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 5.7e-60 235.7 293 43.7
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 4.0e-53 213.0 294 41.2
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.2e-48 197.2 129 72.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 3.5e-33 146.7 150 49.3
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.3e-32 144.8 90 74.4
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 5.6e-31 139.4 82 78.0
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.6e-28 130.6 196 37.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.9e-23 114.4 69 71.0
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 5.4e-10 69.7 42 76.2
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 9.2e-10 68.9 69 53.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 2.1e-09 67.8 101 35.6


User provided reference genes

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