Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 0.0e+00 1286.6 667 100.0
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.3e-285 985.3 659 76.5
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 8.0e-283 976.9 659 76.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.8e-279 965.7 655 75.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.2e-278 963.0 671 75.3
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 5.9e-278 960.7 656 75.5
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 5.9e-278 960.7 654 77.4
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 9.5e-276 953.4 654 76.1
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.8e-275 951.8 668 73.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.0e-274 949.9 659 75.4
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.1e-274 948.3 669 74.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.0e-274 948.0 658 73.9
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 5.2e-274 947.6 656 75.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 4.4e-273 944.5 657 74.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.8e-273 944.1 656 74.7
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 9.8e-273 943.3 663 72.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.7e-272 942.6 656 74.7
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 6.4e-272 940.6 653 74.0
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.1e-271 939.9 659 73.9
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.9e-271 939.1 647 75.7
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 7.0e-271 937.2 654 73.7
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.6e-270 936.0 663 72.5
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.0e-270 935.6 653 73.4
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 3.9e-269 931.4 659 72.2
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.9e-268 929.1 664 71.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 4.3e-268 927.9 662 72.4
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.6e-267 926.0 661 71.4
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 3.6e-267 924.9 664 71.2
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.7e-267 924.5 664 72.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 8.0e-267 923.7 664 70.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.5e-265 919.5 662 70.7
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 3.4e-265 918.3 652 72.2
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 8.3e-264 913.7 655 71.6
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 8.3e-264 913.7 654 71.7
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.1e-263 913.3 655 71.5
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.4e-263 912.1 655 72.1
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 2.4e-263 912.1 654 71.6
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 4.6e-262 907.9 662 69.6
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 6.0e-262 907.5 653 71.7
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.0e-261 905.2 664 70.3
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.1e-261 904.4 652 71.5
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.5e-260 902.1 654 72.2
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 2.5e-260 902.1 656 72.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.6e-259 899.4 654 71.6
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.1e-259 899.0 652 71.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.1e-258 895.2 655 71.9
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 4.0e-258 894.8 689 68.5
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 5.2e-258 894.4 649 71.0
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.2e-257 893.3 662 69.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 7.6e-257 890.6 652 71.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 9.9e-257 890.2 653 71.8
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 9.9e-257 890.2 654 69.1
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 6.4e-256 887.5 661 70.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.1e-255 886.7 660 69.8
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.9e-255 885.9 655 70.1
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.4e-255 885.6 659 68.9
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.2e-255 885.2 665 70.7
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.2e-254 883.2 657 69.9
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 3.5e-254 881.7 660 69.7
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 3.5e-254 881.7 654 70.6
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.7e-253 879.4 656 69.5
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.0e-253 878.6 692 68.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.6e-253 877.1 692 68.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.3e-252 875.2 655 69.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 5.6e-252 874.4 662 69.6
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.4e-250 869.0 666 67.3
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.8e-249 864.4 659 69.7
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 9.9e-249 863.6 666 68.0
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.5e-246 855.1 669 66.8
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 5.1e-245 851.3 589 75.4
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.1e-244 850.1 727 64.8
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.4e-242 843.2 672 64.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.4e-242 842.4 593 73.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 6.9e-242 840.9 652 67.5
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 7.6e-241 837.4 659 66.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.0e-238 827.8 686 65.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 6.6e-237 824.3 607 71.7
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 6.6e-237 824.3 615 69.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 8.7e-237 823.9 672 66.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 4.3e-236 821.6 604 71.2
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 4.3e-236 821.6 643 67.5
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.0e-229 798.9 657 65.6
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 7.6e-225 784.3 596 69.6
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.5e-223 778.1 865 52.3
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.8e-221 773.1 658 62.6
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.1e-220 770.4 670 61.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.3e-213 746.1 696 59.6
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 5.1e-213 745.0 654 63.6
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.9e-200 702.6 657 57.7
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.9e-199 699.9 517 70.6
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.7e-198 695.3 846 50.5
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.2e-191 671.4 491 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.3e-189 666.4 665 55.0
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.2e-185 654.1 572 60.7
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 5.7e-180 635.2 476 69.5
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 3.1e-170 602.8 493 65.9
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.6e-168 595.1 580 55.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.4e-164 582.4 605 54.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 9.2e-146 521.5 438 62.6
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 3.4e-132 476.5 429 59.7
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.8e-116 422.5 469 49.9
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.1e-109 400.2 347 61.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 9.4e-82 308.9 237 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.7e-79 299.7 411 42.8
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.8e-77 294.7 441 42.4
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 9.7e-71 272.3 198 71.7
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.2e-70 271.2 202 71.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.2e-65 255.4 179 71.5
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.6e-60 238.4 285 51.2
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.5e-59 233.0 249 55.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.7e-57 226.9 397 38.5
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.3e-56 224.6 163 67.5
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.3e-50 203.8 139 71.9
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-40 172.6 447 31.1
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 3.1e-40 171.0 168 56.0
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 9.8e-39 166.0 110 73.6
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.2e-36 159.1 138 59.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.5e-34 152.1 145 56.6
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-32 146.0 94 75.5
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-30 139.0 87 77.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 4.9e-30 137.1 90 74.4
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.6e-28 130.6 79 79.7
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 6.0e-28 130.2 93 69.9
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.8e-28 129.8 96 68.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.9e-27 127.5 92 67.4
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 2.5e-26 124.8 161 43.5
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 2.0e-23 115.2 257 34.6
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.6e-23 114.8 83 72.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 7.1e-21 106.7 92 63.0
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.1e-18 99.4 88 61.4
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.9e-18 98.6 159 42.1
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 9.6e-18 96.3 90 61.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.2e-17 95.9 168 35.7
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.6e-17 95.5 65 69.2
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.4e-16 92.4 96 57.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 6.9e-16 90.1 60 73.3
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 6.9e-16 90.1 60 73.3
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.5e-15 89.0 61 70.5
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.7e-14 85.5 67 62.7
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 4.9e-14 84.0 60 66.7
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.6e-12 79.0 89 53.9
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-12 78.2 61 63.9
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.4e-08 65.1 62 46.8
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.3e-08 63.9 49 63.3
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 7.6e-07 60.1 55 63.6


User provided reference genes

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