Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 6.1e-126 454.1 224 100.0
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 5.9e-113 411.0 210 96.2
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 8.5e-96 354.0 223 78.5
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 8.5e-96 354.0 223 78.5
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.4e-95 350.5 222 77.9
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 9.4e-95 350.5 221 77.8
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 5.2e-93 344.7 216 77.3
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.9e-91 338.2 223 75.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.1e-90 337.0 217 76.5
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 2.4e-90 335.9 214 75.2
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 9.2e-90 334.0 217 76.0
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 1.2e-89 333.6 214 73.8
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 4.5e-89 331.6 214 73.4
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 4.5e-89 331.6 211 75.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.0e-88 330.5 220 73.2
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 6.6e-88 327.8 216 74.5
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 1.5e-87 326.6 207 76.3
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.9e-87 326.2 224 70.1
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 2.5e-87 325.9 218 72.9
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.2e-86 323.6 219 70.3
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 8.0e-86 320.9 208 73.1
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.0e-85 320.5 216 72.7
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 3.0e-85 318.9 217 71.9
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 4.0e-85 318.5 217 70.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.0e-85 318.5 218 72.9
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.0e-85 318.5 217 72.4
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 6.8e-85 317.8 209 73.7
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 5.7e-84 314.7 216 71.8
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 9.8e-84 313.9 216 70.8
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 9.8e-84 313.9 216 70.8
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 9.8e-84 313.9 209 72.2
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.3e-83 313.5 216 72.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 2.2e-83 312.8 209 71.8
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 3.7e-83 312.0 219 68.0
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 4.9e-83 311.6 232 66.4
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 6.4e-83 311.2 220 70.5
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 8.3e-83 310.8 219 70.3
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.1e-82 310.5 216 69.9
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.4e-82 310.1 216 70.4
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.4e-82 309.3 216 70.4
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 3.2e-82 308.9 216 71.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 4.1e-82 308.5 216 68.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 4.1e-82 308.5 216 71.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 5.4e-82 308.1 210 71.4
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 5.4e-82 308.1 220 66.4
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 7.0e-82 307.8 220 66.4
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 9.2e-82 307.4 216 70.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 9.2e-82 307.4 210 70.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.6e-81 306.6 216 69.9
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.6e-81 306.6 220 67.3
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 4.6e-81 305.1 216 70.4
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 5.9e-81 304.7 218 69.3
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.0e-80 303.9 214 71.0
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.3e-80 303.5 218 69.3
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.7e-80 303.1 216 69.0
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 2.3e-80 302.8 220 68.6
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 2.3e-80 302.8 210 69.0
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 3.0e-80 302.4 217 69.1
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.9e-80 302.0 215 69.3
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 5.0e-80 301.6 209 69.9
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 5.0e-80 301.6 216 69.9
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 6.6e-80 301.2 219 67.6
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 8.6e-80 300.8 220 70.0
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.5e-79 300.1 216 69.4
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 1.5e-79 300.1 210 71.0
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.5e-79 300.1 209 70.3
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 2.5e-79 299.3 209 69.4
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.2e-78 297.0 220 68.2
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.8e-78 295.8 220 68.2
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 3.6e-78 295.4 217 65.0
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 6.2e-78 294.7 220 67.7
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.8e-77 291.2 220 64.1
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 8.9e-77 290.8 217 65.9
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 1.2e-76 290.4 222 64.9
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 3.4e-76 288.9 220 66.4
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 7.5e-76 287.7 214 63.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.1e-74 283.9 208 65.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.4e-74 283.5 208 65.9
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.4e-74 283.5 209 67.9
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 1.3e-72 276.9 215 64.7
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.3e-72 276.9 215 63.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 5.0e-72 275.0 219 65.3
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 6.6e-72 274.6 221 63.3
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.3e-71 272.3 217 63.1
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 8.9e-69 264.2 218 58.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.0e-68 263.1 216 60.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.3e-67 260.4 194 64.9
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.7e-67 260.0 222 60.4
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 8.3e-67 257.7 213 61.0
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-66 256.9 216 61.6
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 9.2e-66 254.2 214 59.8
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 4.6e-65 251.9 210 60.0
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 6.0e-65 251.5 207 58.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.6e-57 226.9 178 61.2
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 3.3e-55 219.2 156 72.4
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.6e-54 216.9 205 53.2
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 2.4e-50 203.0 210 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 1.2e-49 200.7 210 50.0
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 3.9e-48 195.7 209 45.9
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.2e-44 184.1 209 45.9
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.6e-41 173.7 232 39.7
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 5.3e-37 158.7 113 68.1
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 2.4e-34 149.8 112 66.1
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.2e-34 149.4 219 39.7
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 1.6e-33 147.1 206 44.2
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.7e-33 146.4 105 65.7
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.9e-31 140.2 104 65.4
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.8e-30 135.6 111 64.0
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 8.1e-30 134.8 210 36.2
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.2e-28 131.0 108 63.0
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 3.0e-24 116.3 120 55.8
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 4.1e-21 105.9 71 77.5
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 4.2e-10 69.3 218 24.3
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 9.4e-10 68.2 115 32.2
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 1.2e-09 67.8 115 32.2
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 1.6e-09 67.4 115 31.3
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 1.6e-09 67.4 115 31.3
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 2.7e-09 66.6 115 31.3
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 4.6e-09 65.9 185 24.3
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 7.9e-09 65.1 117 30.8
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.0e-08 64.7 117 29.9
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.0e-08 64.7 118 29.7
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 1.0e-08 64.7 185 24.3
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.4e-08 64.3 115 30.4
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.4e-08 64.3 115 30.4
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.4e-08 64.3 115 31.3
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.8e-08 63.9 117 29.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.8e-08 63.9 115 31.3
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.3e-08 63.5 118 31.4
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.3e-08 63.5 118 31.4
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 3.9e-08 62.8 115 30.4
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 6.7e-08 62.0 116 30.2
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 6.7e-08 62.0 116 30.2
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 6.7e-08 62.0 101 31.7
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 6.7e-08 62.0 115 28.7
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 6.7e-08 62.0 115 29.6
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 8.8e-08 61.6 116 30.2
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 8.8e-08 61.6 116 30.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 8.8e-08 61.6 116 30.2
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 8.8e-08 61.6 116 27.6
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.1e-07 61.2 113 27.4
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 1.5e-07 60.8 117 29.9
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 1.5e-07 60.8 117 29.1
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.5e-07 60.8 115 29.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.5e-07 60.8 118 30.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.0e-07 60.5 190 22.1
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 2.0e-07 60.5 185 23.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.0e-07 60.5 116 29.3
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 2.0e-07 60.5 116 29.3
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 2.0e-07 60.5 115 28.7
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 3.3e-07 59.7 101 29.7
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 7.4e-07 58.5 116 28.4
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 7.4e-07 58.5 113 27.4
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.2e-06 57.0 113 29.2


User provided reference genes

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