Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 5.8e-77 290.8 146 100.0
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 9.6e-56 220.3 150 75.3
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 2.8e-55 218.8 145 73.8
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 2.0e-53 212.6 150 70.7
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 2.6e-53 212.2 145 73.1
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 9.9e-53 210.3 150 70.0
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.7e-52 209.5 149 72.5
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 4.2e-51 204.9 154 69.5
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 5.5e-51 204.5 151 72.2
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 1.6e-50 203.0 148 66.9
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 4.6e-50 201.4 151 71.5
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 2.3e-49 199.1 147 70.1
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 3.0e-49 198.7 144 68.1
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.1e-48 196.8 150 66.0
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.5e-48 196.4 129 76.0
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.5e-48 196.4 151 68.9
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 5.6e-48 194.5 151 68.2
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 5.6e-48 194.5 129 75.2
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.3e-47 193.4 122 76.2
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 2.8e-47 192.2 126 73.0
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 3.7e-47 191.8 128 71.9
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 4.8e-47 191.4 149 64.4
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 4.8e-47 191.4 144 66.7
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 4.8e-47 191.4 124 75.0
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 8.2e-47 190.7 144 66.7
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 1.1e-46 190.3 130 71.5
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 1.4e-46 189.9 156 64.7
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 2.4e-46 189.1 144 66.0
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 3.1e-46 188.7 150 64.0
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 5.3e-46 188.0 130 70.8
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 9.0e-46 187.2 126 72.2
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-45 186.8 150 66.0
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.5e-45 186.4 150 62.0
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.0e-45 186.0 122 72.1
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.0e-45 186.0 156 62.8
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.0e-45 186.0 156 62.8
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 2.0e-45 186.0 130 69.2
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.6e-45 185.7 150 61.3
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 2.6e-45 185.7 120 72.5
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 3.4e-45 185.3 141 66.7
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 3.4e-45 185.3 158 62.7
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 3.4e-45 185.3 122 73.0
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 4.5e-45 184.9 137 66.4
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 4.5e-45 184.9 152 65.1
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 5.8e-45 184.5 130 69.2
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.7e-44 183.0 152 64.5
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 2.2e-44 182.6 150 61.3
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 2.9e-44 182.2 150 61.3
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 2.9e-44 182.2 121 71.1
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 2.9e-44 182.2 121 71.1
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 2.9e-44 182.2 121 71.1
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 2.9e-44 182.2 148 63.5
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.9e-44 182.2 152 64.5
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 4.9e-44 181.4 149 62.4
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.1e-43 180.3 138 65.2
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.4e-43 179.9 144 62.5
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 1.9e-43 179.5 133 63.2
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 3.2e-43 178.7 136 68.4
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 3.2e-43 178.7 156 62.2
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 3.2e-43 178.7 146 61.6
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 4.2e-43 178.3 128 67.2
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 4.2e-43 178.3 136 66.2
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 4.2e-43 178.3 128 67.2
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 7.1e-43 177.6 156 57.7
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 7.1e-43 177.6 126 69.0
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 7.1e-43 177.6 126 69.8
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 9.3e-43 177.2 127 66.1
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 9.3e-43 177.2 122 70.5
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.7e-42 175.6 136 65.4
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 1.8e-41 172.9 146 60.3
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 1.8e-41 172.9 123 69.9
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.0e-41 172.2 125 64.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 5.1e-41 171.4 130 65.4
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 8.7e-41 170.6 121 66.1
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.5e-40 169.9 147 61.2
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.5e-40 169.1 128 63.3
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 7.4e-40 167.5 121 64.5
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 1.3e-39 166.8 122 66.4
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.2e-39 166.0 132 61.4
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.8e-39 165.6 122 63.9
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 4.8e-39 164.9 127 62.2
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 6.3e-39 164.5 121 64.5
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.1e-38 163.7 120 65.8
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.1e-38 161.8 124 63.7
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.3e-38 161.4 105 74.3
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.2e-37 160.2 199 49.7
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 2.0e-37 159.5 122 59.8
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-37 159.1 105 73.3
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 8.5e-36 154.1 153 54.9
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.9e-35 152.9 156 55.1
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 4.2e-35 151.8 122 67.2
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 7.2e-35 151.0 121 70.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 1.6e-34 149.8 100 73.0
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 7.9e-34 147.5 102 70.6
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 1.4e-33 146.7 101 70.3
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 4.3e-32 141.7 122 64.8
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 5.7e-32 141.4 119 55.5
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 3.7e-31 138.7 112 58.9
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 6.3e-31 137.9 167 46.1
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.8e-30 136.3 121 58.7
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 1.8e-30 136.3 111 63.1
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 9.1e-30 134.0 120 52.5
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 9.1e-30 134.0 121 58.7
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 9.1e-30 134.0 122 53.3
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.6e-29 132.5 121 57.9
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.0e-28 130.6 94 67.0
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 1.7e-28 129.8 97 66.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.1e-27 127.1 96 66.7
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 2.5e-27 125.9 104 61.5
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 4.4e-24 115.2 98 61.2
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 4.1e-22 108.6 101 45.5
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 9.1e-22 107.5 90 60.0
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 6.5e-20 101.3 101 46.5
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 3.2e-19 99.0 116 50.0
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 4.2e-19 98.6 145 40.0
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.6e-18 96.7 94 52.1
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 1.6e-18 96.7 74 63.5
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.0e-16 89.7 97 49.5
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.7e-15 86.7 69 59.4
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 1.6e-13 80.1 71 62.0
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 3.2e-11 72.4 119 29.4
EL10Ac2g03070 Beta vulgaris HOM05D000615 ORTHO05D000447 2.4e-06 56.2 34 64.7


User provided reference genes

Program Settings