Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 3.2e-176 621.7 326 100.0
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 2.0e-106 389.8 327 63.0
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.7e-106 389.4 329 64.4
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 2.7e-106 389.4 329 64.7
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 6.0e-106 388.3 329 63.5
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 6.0e-106 388.3 328 62.8
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 7.8e-106 387.9 329 63.8
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 1.0e-105 387.5 329 61.7
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 1.3e-105 387.1 326 65.6
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.7e-105 386.7 329 64.1
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.7e-105 386.7 329 63.5
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.3e-105 386.3 329 63.8
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 5.0e-105 385.2 330 62.4
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 5.0e-105 385.2 329 63.5
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 5.6e-104 381.7 329 62.3
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 9.5e-104 380.9 323 64.1
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 9.5e-104 380.9 332 61.1
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 2.8e-103 379.4 324 65.7
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 8.0e-103 377.9 330 61.5
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 1.4e-102 377.1 328 61.0
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 1.4e-102 377.1 382 55.8
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 3.1e-102 375.9 330 61.2
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 4.0e-102 375.6 332 59.6
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 5.2e-102 375.2 332 61.1
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 2.0e-101 373.2 330 60.3
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 4.4e-101 372.1 329 61.4
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 8.3e-100 367.9 333 61.0
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 3.2e-99 365.9 333 61.3
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.2e-98 364.0 334 58.1
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.0e-98 363.2 330 57.6
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.0e-98 363.2 337 59.6
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 2.7e-98 362.8 325 58.8
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 1.3e-97 360.5 328 57.3
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 1.7e-97 360.1 334 57.5
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 1.7e-97 360.1 332 58.7
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 3.9e-97 359.0 330 58.8
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 6.6e-97 358.2 326 58.3
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 6.6e-97 358.2 332 59.9
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 1.1e-96 357.5 323 59.1
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 2.5e-96 356.3 331 56.8
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 4.3e-96 355.5 334 57.2
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 2.8e-95 352.8 327 56.3
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 6.2e-95 351.7 331 56.8
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 6.2e-95 351.7 319 59.6
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 3.1e-94 349.4 328 57.6
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 3.1e-94 349.4 326 55.5
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 4.0e-94 349.0 332 57.2
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.2e-94 348.6 330 56.1
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 2.6e-93 346.3 332 56.6
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.8e-93 345.1 331 55.0
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 9.9e-93 344.4 329 55.0
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 8.3e-92 341.3 324 56.2
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 1.1e-91 340.9 327 57.5
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.1e-91 340.9 323 58.2
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 1.9e-91 340.1 329 55.3
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 2.4e-91 339.7 331 54.7
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 3.2e-91 339.3 322 55.6
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 7.1e-91 338.2 331 55.3
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 7.1e-91 338.2 331 55.3
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 9.2e-91 337.8 330 51.5
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 1.2e-90 337.4 330 56.7
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 1.6e-90 337.0 348 52.9
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 2.1e-90 336.7 327 57.5
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 1.7e-89 333.6 329 55.0
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 7.3e-88 328.2 328 52.1
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 1.6e-87 327.0 330 53.9
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 2.1e-87 326.6 325 53.5
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 3.6e-87 325.9 324 51.2
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 4.7e-87 325.5 323 51.1
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 1.1e-86 324.3 326 50.3
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 1.1e-86 324.3 385 51.4
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 1.3e-84 317.4 328 51.5
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 3.8e-84 315.8 326 53.1
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.9e-83 313.5 325 51.1
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 3.2e-83 312.8 327 52.3
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 4.1e-83 312.4 321 52.0
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 5.4e-83 312.0 325 48.0
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 1.2e-82 310.8 322 50.0
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 1.6e-82 310.5 330 51.8
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 1.6e-82 310.5 328 53.4
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 2.1e-82 310.1 388 47.2
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 3.5e-82 309.3 325 48.3
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 1.7e-81 307.0 329 50.8
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 1.7e-81 307.0 329 50.8
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 5.1e-81 305.4 325 48.0
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 8.7e-81 304.7 322 50.9
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 1.9e-80 303.5 330 51.5
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 5.6e-80 302.0 325 48.6
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 5.6e-80 302.0 325 48.6
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.2e-79 300.8 334 50.6
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 2.8e-79 299.7 325 48.3
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 1.2e-77 294.3 402 42.8
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 1.3e-76 290.8 300 53.3
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 1.7e-76 290.4 251 58.2
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 3.0e-73 279.6 216 64.4
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 9.6e-72 274.6 340 47.9
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 2.4e-70 270.0 325 48.0
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 4.3e-64 249.2 225 60.0
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 2.4e-62 243.4 328 42.7
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.1e-62 243.0 328 43.6
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 1.6e-58 230.7 214 57.5
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 6.7e-49 198.7 335 36.4
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 4.6e-42 176.0 287 36.9
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 2.0e-37 160.6 324 29.6
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.3e-36 157.9 302 35.4
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 4.4e-32 142.9 228 36.4
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 1.4e-30 137.9 256 32.8
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 3.8e-20 103.2 139 41.7
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 1.0e-12 78.6 102 52.0
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 5.0e-12 76.3 76 56.6
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 8.5e-12 75.5 227 26.9
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.2e-11 73.6 142 37.3
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 9.4e-11 72.0 241 27.0
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 1.6e-10 71.2 226 23.0
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 2.7e-10 70.5 253 26.5
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 2.7e-10 70.5 241 26.1
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.8e-09 67.8 238 24.4
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 3.0e-09 67.0 226 21.7
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 5.2e-09 66.2 249 28.1
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 5.2e-09 66.2 244 23.4
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 5.2e-09 66.2 246 28.0
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 6.8e-09 65.9 241 25.3
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 8.8e-09 65.5 245 24.9
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.2e-08 65.1 223 21.1
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 1.5e-08 64.7 242 26.0
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 2.6e-08 63.9 236 22.0
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 3.4e-08 63.5 242 24.4
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 4.4e-08 63.2 249 27.3
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 4.4e-08 63.2 225 23.1
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 5.7e-08 62.8 244 23.4
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 7.5e-08 62.4 225 22.7
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 9.8e-08 62.0 241 22.8
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 1.7e-07 61.2 228 23.2
CARHR215930 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.2e-07 60.8 68 41.2
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 2.2e-07 60.8 224 20.5
Sabra13G0037400 Salix brachista HOM05D006821 ORTHO05D349522 2.2e-07 60.8 57 59.6
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 3.7e-07 60.1 225 22.2
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 3.7e-07 60.1 225 22.2
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 3.7e-07 60.1 243 23.0
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 3.7e-07 60.1 87 40.2
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 4.8e-07 59.7 244 22.1
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 4.8e-07 59.7 245 22.0
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 6.3e-07 59.3 234 21.4
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 6.3e-07 59.3 243 25.1
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 8.3e-07 58.9 223 20.2
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.1e-06 58.5 226 22.1
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 1.1e-06 58.5 223 22.0
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 1.8e-06 57.8 244 22.5
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 1.8e-06 57.8 244 22.5
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.8e-06 57.8 226 22.1
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 1.8e-06 57.8 223 21.5
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 2.4e-06 57.4 226 19.5
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 3.1e-06 57.0 223 21.1
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 3.1e-06 57.0 189 24.9
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 3.1e-06 57.0 223 21.5
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 4.1e-06 56.6 225 20.0
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 5.4e-06 56.2 236 21.6
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 7.0e-06 55.8 110 30.0
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 7.0e-06 55.8 224 18.8
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 7.0e-06 55.8 176 23.3
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 9.1e-06 55.5 226 20.4
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 9.1e-06 55.5 242 24.8


User provided reference genes

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